Yoshua Bengio

Biographie

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Reconnu comme une sommité mondiale en intelligence artificielle, Yoshua Bengio s’est surtout distingué par son rôle de pionnier en apprentissage profond, ce qui lui a valu le prix A. M. Turing 2018, le « prix Nobel de l’informatique », avec Geoffrey Hinton et Yann LeCun. Il est professeur titulaire à l’Université de Montréal, fondateur et conseiller scientifique de Mila – Institut québécois d’intelligence artificielle, et codirige en tant que senior fellow le programme Apprentissage automatique, apprentissage biologique de l'Institut canadien de recherches avancées (CIFAR). Il occupe également la fonction de conseiller spécial et directeur scientifique fondateur d’IVADO.

En 2018, il a été l’informaticien qui a recueilli le plus grand nombre de nouvelles citations au monde. En 2019, il s’est vu décerner le prestigieux prix Killam. Depuis 2022, il détient le plus grand facteur d’impact (h-index) en informatique à l’échelle mondiale. Il est fellow de la Royal Society de Londres et de la Société royale du Canada, et officier de l’Ordre du Canada.

Soucieux des répercussions sociales de l’IA et de l’objectif que l’IA bénéficie à tous, il a contribué activement à la Déclaration de Montréal pour un développement responsable de l’intelligence artificielle.

Étudiants actuels

Jamal Abou Haibeh

Collaborateur·rice alumni - McGill

Berkes Anaïs

Collaborateur·rice de recherche - Cambridge University

Superviseur⋅e principal⋅e :

Rim Assouel

Doctorat - UdeM

Shahana Chatterjee

Collaborateur·rice de recherche - N/A

Superviseur⋅e principal⋅e :

Doctorat - UdeM

Collaborateur·rice de recherche - KAIST

Doctorat - UdeM

Collaborateur·rice alumni - UdeM

Co-superviseur⋅e :

Loubna Benabbou

Desmond Elliott

Visiteur de recherche indépendant

Superviseur⋅e principal⋅e :

Doctorat - UdeM

Co-superviseur⋅e :

Doctorat - UdeM

Doctorat - UdeM

Doctorat

Doctorat - UdeM

Moksh Jain

Doctorat - UdeM

Doctorat - UdeM

Superviseur⋅e principal⋅e :

Collaborateur·rice alumni - UdeM

Hyeonah Kim

Postdoctorat - UdeM

Superviseur⋅e principal⋅e :

Alex Hernández-García

Tabitha Edith Lee

Postdoctorat - UdeM

Superviseur⋅e principal⋅e :

Collaborateur·rice alumni

Collaborateur·rice alumni - UdeM

Cristian Dragos Manta

Doctorat - UdeM

Co-superviseur⋅e :

Dhanya Sridhar

Sarthak Mittal

Doctorat - UdeM

Superviseur⋅e principal⋅e :

Visiteur de recherche indépendant - UdeM

Padideh Nouri

Doctorat - UdeM

Superviseur⋅e principal⋅e :

Ali Parviz

Collaborateur·rice de recherche - Ying Wu Coll of Computing

Lena Podina

Collaborateur·rice de recherche - University of Waterloo

Superviseur⋅e principal⋅e :

David Rolnick

Camille Rochefort-Boulanger

Nassim Rahaman

Collaborateur·rice alumni - Max-Planck-Institute for Intelligent Systems

Doctorat - UdeM

Postdoctorat - UdeM

Postdoctorat - UdeM

Doctorat - UdeM

Superviseur⋅e principal⋅e :

Julie Hussin

Dragos Secrieru

Collaborateur·rice alumni - UdeM

Divya Sharma

Postdoctorat

Co-superviseur⋅e :

Alex Hernández-García

Mélisande Astrid Crystal Teng

Vincent Taboga

Collaborateur·rice alumni - Polytechnique

Co-superviseur⋅e :

Doctorat - UdeM

Co-superviseur⋅e :

Hugo Larochelle

Ivan Titov

Collaborateur·rice de recherche

Superviseur⋅e principal⋅e :

Siva Reddy

Alex Tong

Collaborateur·rice alumni - UdeM

Collaborateur·rice alumni - UdeM

Co-superviseur⋅e :

Doctorat - UdeM

Superviseur⋅e principal⋅e :

Collaborateur·rice de recherche

Collaborateur·rice de recherche - UdeM

Doctorat - UdeM

Doctorat - McGill

Superviseur⋅e principal⋅e :

Doctorat - UdeM

Superviseur⋅e principal⋅e :

Aaron Courville

Skipper : combiner l’abstraction spatiale et temporelle afin d’améliorer la généralisation

Harry Zhao

Collaborateur·rice alumni - McGill

Superviseur⋅e principal⋅e :

Billets de blogue

Generic thumbnail for Mila Blog articles.

22 février 2024

par

Mingde Harry Zhao

Safa Alver

Harm van Seijen

Romain Laroche

Doina Precup

Yoshua Bengio

Mise à l’échelle au service du raisonnement et de l’apprentissage automatique basé sur un modèle

Scaling in the service of reasoning & model-based ML

4 avril 2023

par

Yoshua Bengio

Edward J. Hu

Une collaboration entre Mila et Relation Therapeutics pour découvrir in vitro de nouvelles associations médicamenteuses synergiques

A collaboration between Mila and Relation Therapeutics to discover novel synergistic combinations of drugs in vitro

23 mars 2022

par

Paul Bertin

Jake P. Taylor-King

Yoshua Bengio

Les réseaux de flot génératifs

15 mars 2022

par

Yoshua Bengio

Publications

GraphMix: Improved Training of GNNs for Semi-Supervised Learning

Juho Kannala

We present GraphMix, a regularization method for Graph Neural Network based semi-supervised object classification, whereby we propose to tra… (voir plus)in a fully-connected network jointly with the graph neural network via parameter sharing and interpolation-based regularization. Further, we provide a theoretical analysis of how GraphMix improves the generalization bounds of the underlying graph neural network, without making any assumptions about the "aggregation" layer or the depth of the graph neural networks. We experimentally validate this analysis by applying GraphMix to various architectures such as Graph Convolutional Networks, Graph Attention Networks and Graph-U-Net. Despite its simplicity, we demonstrate that GraphMix can consistently improve or closely match state-of-the-art performance using even simpler architectures such as Graph Convolutional Networks, across three established graph benchmarks: Cora, Citeseer and Pubmed citation network datasets, as well as three newly proposed datasets: Cora-Full, Co-author-CS and Co-author-Physics.

2020-10-10

AAAI Conference on Artificial Intelligence (publié)

COVI-AgentSim: an Agent-based Model for Evaluating Methods of Digital Contact Tracing

Prateek Gupta

Tegan Maharaj

Martin Weiss

Nasim Rahaman

Hannah Alsdurf

Abhinav Sharma

Nanor Minoyan

Soren Harnois Leblanc

Victor Schmidt

Pierre-Luc St. Charles

Akshay Patel

David Buckeridge … (voir 9 de plus)

Joumana Ghosn

Yang Zhang

Bernhard Schölkopf

Jian Tang

Irina Rish

Christopher Pal

Joanna Merckx

Eilif B. Muller

The rapid global spread of COVID-19 has led to an unprecedented demand for effective methods to mitigate the spread of the disease, and vari… (voir plus)ous digital contact tracing (DCT) methods have emerged as a component of the solution. In order to make informed public health choices, there is a need for tools which allow evaluation and comparison of DCT methods. We introduce an agent-based compartmental simulator we call COVI-AgentSim, integrating detailed consideration of virology, disease progression, social contact networks, and mobility patterns, based on parameters derived from empirical research. We verify by comparing to real data that COVI-AgentSim is able to reproduce realistic COVID-19 spread dynamics, and perform a sensitivity analysis to verify that the relative performance of contact tracing methods are consistent across a range of settings. We use COVI-AgentSim to perform cost-benefit analyses comparing no DCT to: 1) standard binary contact tracing (BCT) that assigns binary recommendations based on binary test results; and 2) a rule-based method for feature-based contact tracing (FCT) that assigns a graded level of recommendation based on diverse individual features. We find all DCT methods consistently reduce the spread of the disease, and that the advantage of FCT over BCT is maintained over a wide range of adoption rates. Feature-based methods of contact tracing avert more disability-adjusted life years (DALYs) per socioeconomic cost (measured by productive hours lost). Our results suggest any DCT method can help save lives, support re-opening of economies, and prevent second-wave outbreaks, and that FCT methods are a promising direction for enriching BCT using self-reported symptoms, yielding earlier warning signals and a significantly reduced spread of the virus per socioeconomic cost.

2020-10-01

OpenReview.net/Anonymous_Preprint (inconnu)

openreview.net

Generating Multiscale Amorphous Molecular Structures Using Deep Learning: A Study in 2D.

Michael Kilgour

Nicolas Gastellu

David Y. T. Hui

Lena Simine

Amorphous molecular assemblies appear in a vast array of systems: from living cells to chemical plants and from everyday items to new device… (voir plus)s. The absence of long-range order in amorphous materials implies that precise knowledge of their underlying structures throughout is needed to rationalize and control their properties at the mesoscale. Standard computational simulations suffer from exponentially unfavorable scaling of the required compute with system size. We present a method based on deep learning that leverages the finite range of structural correlations for an autoregressive generation of disordered molecular aggregates up to arbitrary size from small-scale computational or experimental samples. We benchmark performance on self-assembled nanoparticle aggregates and proceed to simulate monolayer amorphous carbon with atomistic resolution. This method bridges the gap between the nanoscale and mesoscale simulations of amorphous molecular systems.

2020-09-23

Journal of Physical Chemistry Letters (publié)

A learning-based algorithm to quickly compute good primal solutions for Stochastic Integer Programs

Emma Frejinger

Andrea Lodi

Rahul Patel

Sriram Sankaranarayanan

We propose a novel approach using supervised learning to obtain near-optimal primal solutions for two-stage stochastic integer programming (… (voir plus)2SIP) problems with constraints in the first and second stages. The goal of the algorithm is to predict a "representative scenario" (RS) for the problem such that, deterministically solving the 2SIP with the random realization equal to the RS, gives a near-optimal solution to the original 2SIP. Predicting an RS, instead of directly predicting a solution ensures first-stage feasibility of the solution. If the problem is known to have complete recourse, second-stage feasibility is also guaranteed. For computational testing, we learn to find an RS for a two-stage stochastic facility location problem with integer variables and linear constraints in both stages and consistently provide near-optimal solutions. Our computing times are very competitive with those of general-purpose integer programming solvers to achieve a similar solution quality.

2020-09-18

Integration of Constraint Programming, Artificial Intelligence, and Operations Research (publié)

Mastering Rate based Curriculum Learning

Lucas Willems

Salem Lahlou

2020-08-13

ArXiv (prépublication)

Deriving Differential Target Propagation from Iterating Approximate Inverses

2020-07-28

ArXiv (prépublication)

Predicting COVID-19 Pneumonia Severity on Chest X-ray With Deep Learning

Beiyi Shen

Almas F Abbasi

Hoshmand Kochi Mahsa

Marzyeh Ghassemi

Haifang Li

Tim Q Duong

Introduction The need to streamline patient management for coronavirus disease-19 (COVID-19) has become more pressing than ever. Chest X-ray… (voir plus)s (CXRs) provide a non-invasive (potentially bedside) tool to monitor the progression of the disease. In this study, we present a severity score prediction model for COVID-19 pneumonia for frontal chest X-ray images. Such a tool can gauge the severity of COVID-19 lung infections (and pneumonia in general) that can be used for escalation or de-escalation of care as well as monitoring treatment efficacy, especially in the ICU. Methods Images from a public COVID-19 database were scored retrospectively by three blinded experts in terms of the extent of lung involvement as well as the degree of opacity. A neural network model that was pre-trained on large (non-COVID-19) chest X-ray datasets is used to construct features for COVID-19 images which are predictive for our task. Results This study finds that training a regression model on a subset of the outputs from this pre-trained chest X-ray model predicts our geographic extent score (range 0-8) with 1.14 mean absolute error (MAE) and our lung opacity score (range 0-6) with 0.78 MAE. Conclusions These results indicate that our model’s ability to gauge the severity of COVID-19 lung infections could be used for escalation or de-escalation of care as well as monitoring treatment efficacy, especially in the ICU. To enable follow up work, we make our code, labels, and data available online.

2020-07-27

Cureus (publié)

Learning to Navigate the Synthetically Accessible Chemical Space Using Reinforcement Learning

Sai Krishna Gottipati

Boris Sattarov

Sufeng Niu

Yashaswi Pathak

Haoran Wei

Karam J. Thomas

Connor W. Coley

Over the last decade, there has been significant progress in the field of machine learning for de novo drug design, particularly in deep gen… (voir plus)erative models. However, current generative approaches exhibit a significant challenge as they do not ensure that the proposed molecular structures can be feasibly synthesized nor do they provide the synthesis routes of the proposed small molecules, thereby seriously limiting their practical applicability. In this work, we propose a novel forward synthesis framework powered by reinforcement learning (RL) for de novo drug design, Policy Gradient for Forward Synthesis (PGFS), that addresses this challenge by embedding the concept of synthetic accessibility directly into the de novo drug design system. In this setup, the agent learns to navigate through the immense synthetically accessible chemical space by subjecting commercially available small molecule building blocks to valid chemical reactions at every time step of the iterative virtual multi-step synthesis process. The proposed environment for drug discovery provides a highly challenging test-bed for RL algorithms owing to the large state space and high-dimensional continuous action space with hierarchical actions. PGFS achieves state-of-the-art performance in generating structures with high QED and penalized clogP. Moreover, we validate PGFS in an in-silico proof-of-concept associated with three HIV targets. Finally, we describe how the end-to-end training conceptualized in this study represents an important paradigm in radically expanding the synthesizable chemical space and automating the drug discovery process.

2020-07-13

ICML (Accept)

proceedings.mlr.press

S2RMs: Spatially Structured Recurrent Modules

Nasim Rahaman

Anirudh Goyal

Muhammad Waleed Gondal

Manuel Wuthrich

Stefan Bauer

Y. Sharma

Bernhard Schölkopf

2020-07-12

ArXiv (prépublication)

Compositional Generalization by Factorizing Alignment and Translation

Jacob Russin

Jason Jo

R. O’Reilly

2020-06-30

Annual Meeting of the Association for Computational Linguistics (publié)

Exploiting Syntactic Structure for Better Language Modeling: A Syntactic Distance Approach

Wenyu Du

Zhouhan Lin

Yikang Shen

Timothy J. O’Donnell

Yue Zhang

It is commonly believed that knowledge of syntactic structure should improve language modeling. However, effectively and computationally eff… (voir plus)iciently incorporating syntactic structure into neural language models has been a challenging topic. In this paper, we make use of a multi-task objective, i.e., the models simultaneously predict words as well as ground truth parse trees in a form called "syntactic distances", where information between these two separate objectives shares the same intermediate representation. Experimental results on the Penn Treebank and Chinese Treebank datasets show that when ground truth parse trees are provided as additional training signals, the model is able to achieve lower perplexity and induce trees with better quality.

2020-06-30

Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics (publié)

Factorized embeddings learns rich and biologically meaningful embedding spaces using factorized tensor decomposition

Claude Perreault

The recent development of sequencing technologies revolutionized our understanding of the inner workings of the cell as well as the way dise… (voir plus)ase is treated. A single RNA sequencing (RNA-Seq) experiment, however, measures tens of thousands of parameters simultaneously. While the results are information rich, data analysis provides a challenge. Dimensionality reduction methods help with this task by extracting patterns from the data by compressing it into compact vector representations. We present the factorized embeddings (FE) model, a self-supervised deep learning algorithm that learns simultaneously, by tensor factorization, gene and sample representation spaces. We ran the model on RNA-Seq data from two large-scale cohorts and observed that the sample representation captures information on single gene and global gene expression patterns. Moreover, we found that the gene representation space was organized such that tissue-specific genes, highly correlated genes as well as genes participating in the same GO terms were grouped. Finally, we compared the vector representation of samples learned by the FE model to other similar models on 49 regression tasks. We report that the representations trained with FE rank first or second in all of the tasks, surpassing, sometimes by a considerable margin, other representations. A toy example in the form of a Jupyter Notebook as well as the code and trained embeddings for this project can be found at: https://github.com/TrofimovAssya/FactorizedEmbeddings. Supplementary data are available at Bioinformatics online.

2020-06-30

Bioinform. (publié)