Publications

A Definition of Continual Reinforcement Learning
David Abel
Andre Barreto
Benjamin Van Roy
Doina Precup
Hado van Hasselt
Satinder Singh
2023-09-20
NeurIPS.cc/2023/Conference (poster)
doi.org
openreview.net
DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing
Yangtian Zhang
Zuobai Zhang
Bozitao Zhong
Sanchit Misra
Jian Tang
Proteins play a critical role in carrying out biological functions, and their 3D structures are essential in determining their functions. Ac… (voir plus)curately predicting the conformation of protein side-chains given their backbones is important for applications in protein structure prediction, design and protein-protein interactions. Traditional methods are computationally intensive and have limited accuracy, while existing machine learning methods treat the problem as a regression task and overlook the restrictions imposed by the constant covalent bond lengths and angles. In this work, we present DiffPack, a torsional diffusion model that learns the joint distribution of side-chain torsional angles, the only degrees of freedom in side-chain packing, by diffusing and denoising on the torsional space. To avoid issues arising from simultaneous perturbation of all four torsional angles, we propose autoregressively generating the four torsional angles from
2023-09-20
NeurIPS.cc/2023/Conference (poster)
doi.org
openreview.net
A Diffusion-Model of Joint Interactive Navigation
Matthew Niedoba
Jonathan Wilder Lavington
Yunpeng Liu
Vasileios Lioutas
Justice Sefas
Xiaoxuan Liang
Dylan Green
Setareh Dabiri
Berend Zwartsenberg
Adam Ścibior
Frank N. Wood
Simulation of autonomous vehicle systems requires that simulated traffic participants exhibit diverse and realistic behaviors. The use of pr… (voir plus)erecorded real-world traffic scenarios in simulation ensures realism but the rarity of safety critical events makes large scale collection of driving scenarios expensive. In this paper, we present DJINN - a diffusion based method of generating traffic scenarios. Our approach jointly diffuses the trajectories of all agents, conditioned on a flexible set of state observations from the past, present, or future. On popular trajectory forecasting datasets, we report state of the art performance on joint trajectory metrics. In addition, we demonstrate how DJINN flexibly enables direct test-time sampling from a variety of valuable conditional distributions including goal-based sampling, behavior-class sampling, and scenario editing.
2023-09-20
NeurIPS.cc/2023/Conference (poster)
doi.org
openreview.net
Double Gumbel Q-Learning
David Yu-tung Hui
Aaron Courville
Pierre-Luc Bacon
2023-09-20
NeurIPS.cc/2023/Conference (spotlight)
openreview.net
openreview.net
On Dynamic Programming Decompositions of Static Risk Measures in Markov Decision Processes
Jia Lin Hau
Erick Delage
Mohammad Ghavamzadeh
Marek Petrik
2023-09-20
NeurIPS.cc/2023/Conference (poster)
openreview.net
openreview.net
DynGFN: Towards Bayesian Inference of Gene Regulatory Networks with GFlowNets
Lazar Atanackovic
Alexander Tong
Jason Hartford
Leo J. Lee
Bo Wang
Yoshua Bengio
One of the grand challenges of cell biology is inferring the gene regulatory network (GRN) which describes interactions between genes and th… (voir plus)eir products that control gene expression and cellular function. We can treat this as a causal discovery problem but with two non-standard challenges: (1) regulatory networks are inherently cyclic so we should not model a GRN as a directed acyclic graph (DAG), and (2) observations have significant measurement noise, so for typical sample sizes there will always be a large equivalence class of graphs that are likely given the data, and we want methods that capture this uncertainty. Existing methods either focus on challenge (1), identifying cyclic structure from dynamics, or on challenge (2) learning complex Bayesian posteriors over DAGs, but not both. In this paper we leverage the fact that it is possible to estimate the "velocity" of gene expression with RNA velocity techniques to develop an approach that addresses both challenges. Because we have access to velocity information, we can treat the Bayesian structure learning problem as a problem of sparse identification of a dynamical system, capturing cyclic feedback loops through time. Since our objective is to model uncertainty over discrete structures, we leverage Generative Flow Networks (GFlowNets) to estimate the posterior distribution over the combinatorial space of possible sparse dependencies. Our results indicate that our method learns posteriors that better encapsulate the distributions of cyclic structures compared to counterpart state-of-the-art Bayesian structure learning approaches.
2023-09-20
NeurIPS.cc/2023/Conference (poster)
doi.org
openreview.net
Equivariant Adaptation of Large Pretrained Models
Arnab Kumar Mondal
Siba Smarak Panigrahi
Sékou-Oumar Kaba
Sai Rajeswar
Siamak Ravanbakhsh
Equivariant networks are specifically designed to ensure consistent behavior with respect to a set of input transformations, leading to high… (voir plus)er sample efficiency and more accurate and robust predictions. However, redesigning each component of prevalent deep neural network architectures to achieve chosen equivariance is a difficult problem and can result in a computationally expensive network during both training and inference. A recently proposed alternative towards equivariance that removes the architectural constraints is to use a simple canonicalization network that transforms the input to a canonical form before feeding it to an unconstrained prediction network. We show here that this approach can effectively be used to make a large pretrained network equivariant. However, we observe that the produced canonical orientations can be misaligned with those of the training distribution, hindering performance. Using dataset-dependent priors to inform the canonicalization function, we are able to make large pretrained models equivariant while maintaining their performance. This significantly improves the robustness of these models to deterministic transformations of the data, such as rotations. We believe this equivariant adaptation of large pretrained models can help their domain-specific applications with known symmetry priors.
2023-09-20
NeurIPS.cc/2023/Conference (poster)
doi.org
openreview.net
For SALE: State-Action Representation Learning for Deep Reinforcement Learning
Scott Fujimoto
Wei-Di Chang
Edward J. Smith
Shixiang Shane Gu
Doina Precup
David Meger
In the field of reinforcement learning (RL), representation learning is a proven tool for complex image-based tasks, but is often overlooked… (voir plus) for environments with low-level states, such as physical control problems. This paper introduces SALE, a novel approach for learning embeddings that model the nuanced interaction between state and action, enabling effective representation learning from low-level states. We extensively study the design space of these embeddings and highlight important design considerations. We integrate SALE and an adaptation of checkpoints for RL into TD3 to form the TD7 algorithm, which significantly outperforms existing continuous control algorithms. On OpenAI gym benchmark tasks, TD7 has an average performance gain of 276.7% and 50.7% over TD3 at 300k and 5M time steps, respectively, and works in both the online and offline settings.
2023-09-20
NeurIPS.cc/2023/Conference (poster)
doi.org
openreview.net
GAUCHE: A Library for Gaussian Processes in Chemistry
Ryan-Rhys Griffiths
Leo Klarner
Henry Moss
Aditya Ravuri
Sang Truong
Bojana Rankovic
Samuel Stanton
Yuanqi Du
Arian Jamasb
Gary Tom
Julius Schwartz
Austin Tripp
Aryan Deshwal
Gregory Kell
Anthony Bourached
Alex J. Chan
Jacob Moss
Chengzhi Guo
Simon Frieder
Alpha A. Lee … (voir 8 de plus)
Philippe Schwaller
Jian Tang
Johannes Durholt
Saudamini Chaurasia
Ji Won Park
Felix Strieth-Kalthoff
Bingqing Cheng
Alán Aspuru-Guzik
We introduce GAUCHE, a library for GAUssian processes in CHEmistry. Gaussian processes have long been a cornerstone of probabilistic machine… (voir plus) learning, affording particular advantages for uncertainty quantification and Bayesian optimisation. Extending Gaussian processes to chemical representations, however, is nontrivial, necessitating kernels defined over structured inputs such as graphs, strings and bit vectors. By defining such kernels in GAUCHE, we seek to open the door to powerful tools for uncertainty quantification and Bayesian optimisation in chemistry. Motivated by scenarios frequently encountered in experimental chemistry, we showcase applications for GAUCHE in molecular discovery and chemical reaction optimisation. The codebase is made available at https://github.com/leojklarner/gauche
2023-09-20
NeurIPS.cc/2023/Conference (poster)
doi.org
openreview.net
Group Robust Classification Without Any Group Information
Christos Tsirigotis
Joao Monteiro
Pau Rodríguez
David Vázquez
Aaron Courville
Empirical risk minimization (ERM) is sensitive to spurious correlations in the training data, which poses a significant risk when deploying … (voir plus)systems trained under this paradigm in high-stake applications. While the existing literature focuses on maximizing group-balanced or worst-group accuracy, estimating these accuracies is hindered by costly bias annotations. This study contends that current bias-unsupervised approaches to group robustness continue to rely on group information to achieve optimal performance. Firstly, these methods implicitly assume that all group combinations are represented during training. To illustrate this, we introduce a systematic generalization task on the MPI3D dataset and discover that current algorithms fail to improve the ERM baseline when combinations of observed attribute values are missing. Secondly, bias labels are still crucial for effective model selection, restricting the practicality of these methods in real-world scenarios. To address these limitations, we propose a revised methodology for training and validating debiased models in an entirely bias-unsupervised manner. We achieve this by employing pretrained self-supervised models to reliably extract bias information, which enables the integration of a logit adjustment training loss with our validation criterion. Our empirical analysis on synthetic and real-world tasks provides evidence that our approach overcomes the identified challenges and consistently enhances robust accuracy, attaining performance which is competitive with or outperforms that of state-of-the-art methods, which, conversely, rely on bias labels for validation.
2023-09-20
NeurIPS.cc/2023/Conference (poster)
doi.org
openreview.net
Guiding The Last Layer in Federated Learning with Pre-Trained Models
Gwen Legate
Nicolas Bernier
Lucas Caccia
Edouard Oyallon
Eugene Belilovsky
Federated Learning (FL) is an emerging paradigm that allows a model to be trained across a number of participants without sharing data. Rece… (voir plus)nt works have begun to consider the effects of using pre-trained models as an initialization point for existing FL algorithms; however, these approaches ignore the vast body of efficient transfer learning literature from the centralized learning setting. Here we revisit the problem of FL from a pre-trained model considered in prior work and expand it to a set of computer vision transfer learning problems. We first observe that simply fitting a linear classification head can be efficient and effective in many cases. We then show that in the FL setting, fitting a classifier using the Nearest Class Means (NCM) can be done exactly and orders of magnitude more efficiently than existing proposals, while obtaining strong performance. Finally, we demonstrate that using a two-phase approach of obtaining the classifier and then fine-tuning the model can yield rapid convergence and improved generalization in the federated setting. We demonstrate the potential our method has to reduce communication and compute costs while achieving better model performance.
2023-09-20
NeurIPS.cc/2023/Conference (poster)
doi.org
openreview.net
Importance-aware Co-teaching for Offline Model-based Optimization
Ye Yuan
Can Chen
Zixuan Liu
Willie Neiswanger
Xue Liu
2023-09-20
NeurIPS.cc/2023/Conference (poster)
openreview.net
openreview.net