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Publications
How can we do better ? Pitfalls in biomedical challenge design and how to address them
Since the first MICCAI grand challenge was organized in 2007 [1], the impact of biomedical image analysis challenges on both the research fi… (voir plus)eld as well as on individual careers has been steadily growing. For example, the acceptance of a journal article today often depends on the performance of a new algorithm being assessed against the state-ofthe-art work on publicly available challenge datasets. Furthermore, the results are also important for the individuals scientific careers as well as the potential that algorithms can be translated into clinical practice. Yet, while the publication of papers in scientific journals and prestigious conferences, such as MICCAI, undergoes strict quality control, the design and organization of challenges do not. To investigate the effect of common practice, we have formed an international initiative dedicated to analyzing and improving a variety of aspects related to biomedical challenge design, execution and reporting [2]. In the first part of our abstract presentation at LABELS workshop, we are going to present some of the major pitfalls related to biomedical image analysis challenges today. Specifically, we will look at the following research questions: RQ1: How robust are challenge rankings? What is the effect of – the specific test cases used? – the specific metric variant(s) applied? – the rank aggregation method chosen (e.g. aggregation of metric values with the mean vs median)? ? Shared first/senior authors.
Image-to-image translation for cross-domain disentanglement
Deep image translation methods have recently shown excellent results, outputting high-quality images covering multiple modes of the data dis… (voir plus)tribution. There has also been increased interest in disentangling the internal representations learned by deep methods to further improve their performance and achieve a finer control. In this paper, we bridge these two objectives and introduce the concept of cross-domain disentanglement. We aim to separate the internal representation into three parts. The shared part contains information for both domains. The exclusive parts, on the other hand, contain only factors of variation that are particular to each domain. We achieve this through bidirectional image translation based on Generative Adversarial Networks and cross-domain autoencoders, a novel network component. Our model offers multiple advantages. We can output diverse samples covering multiple modes of the distributions of both domains, perform domain-specific image transfer and interpolation, and cross-domain retrieval without the need of labeled data, only paired images. We compare our model to the state-of-the-art in multi-modal image translation and achieve better results for translation on challenging datasets as well as for cross-domain retrieval on realistic datasets.
Despite the advances in the representational capacity of approximate distributions for variational inference, the optimization process can s… (voir plus)till limit the density that is ultimately learned. We demonstrate the drawbacks of biasing the true posterior to be unimodal, and introduce Annealed Variational Objectives (AVO) into the training of hierarchical variational methods. Inspired by Annealed Importance Sampling, the proposed method facilitates learning by incorporating energy tempering into the optimization objective. In our experiments, we demonstrate our method's robustness to deterministic warm up, and the benefits of encouraging exploration in the latent space.
It has been discussed that over-parameterized deep neural networks (DNNs) trained using stochastic gradient descent (SGD) with smaller batch… (voir plus) sizes generalize better compared with those trained with larger batch sizes. Additionally, model parameters found by small batch size SGD tend to be in flatter regions. We extend these empirical observations and experimentally show that both large learning rate and small batch size contribute towards SGD finding flatter minima that generalize well. Conversely, we find that small learning rates and large batch sizes lead to sharper minima that correlate with poor generalization in DNNs.
A lot of the recent success in natural language processing (NLP) has been driven by distributed vector representations of words trained on l… (voir plus)arge amounts of text in an unsupervised manner. These representations are typically used as general purpose features for words across a range of NLP problems. However, extending this success to learning representations of sequences of words, such as sentences, remains an open problem. Recent work has explored unsupervised as well as supervised learning techniques with different training objectives to learn general purpose fixed-length sentence representations. In this work, we present a simple, effective multi-task learning framework for sentence representations that combines the inductive biases of diverse training objectives in a single model. We train this model on several data sources with multiple training objectives on over 100 million sentences. Extensive experiments demonstrate that sharing a single recurrent sentence encoder across weakly related tasks leads to consistent improvements over previous methods. We present substantial improvements in the context of transfer learning and low-resource settings using our learned general-purpose representations.
Graph Weighted Models (GWMs) have recently been proposed as a natural generalization of weighted automata over strings and trees to arbitrar… (voir plus)y families of labeled graphs (and hypergraphs). A GWM generically associates a labeled graph with a tensor network and computes a value by successive contractions directed by its edges. In this paper, we consider the problem of learning GWMs defined over the graph family of pictures (or 2-dimensional words). As a proof of concept, we consider regression and classification tasks over the simple Bars & Stripes and Shifting Bits picture languages and provide an experimental study investigating whether these languages can be learned in the form of a GWM from positive and negative examples using gradient-based methods. Our results suggest that this is indeed possible and that investigating the use of gradient-based methods to learn picture series and functions computed by GWMs over other families of graphs could be a fruitful direction.
In this paper, we propose a conceptually simple and general framework called MetaGAN for few-shot learning problems. Most state-of-the-art f… (voir plus)ew-shot classification models can be integrated with MetaGAN in a principled and straightforward way. By introducing an adversarial generator conditioned on tasks, we augment vanilla few-shot classification models with the ability to discriminate between real and fake data. We argue that this GAN-based approach can help few-shot classifiers to learn sharper decision boundary, which could generalize better. We show that with our MetaGAN framework, we can extend supervised few-shot learning models to naturally cope with unlabeled data. Different from previous work in semi-supervised few-shot learning, our algorithms can deal with semi-supervision at both sample-level and task-level. We give theoretical justifications of the strength of MetaGAN, and validate the effectiveness of MetaGAN on challenging few-shot image classification benchmarks.
In this paper, we develop algorithmic approaches for a recently defined class of games, the integer programming games. Two general methods t… (voir plus)o approximate an equilibrium are presented and enhanced in order to improve their practical efficiency. Their performance is analysed through computational experiments in a knapsack game and a competitive lot-sizing game. To the best of our knowledge, this is the first time that equilibria computation methods for general integer programming games are build and computationally tested.
Negative eigenvalues of the Hessian in deep neural networks
The loss function of deep networks is known to be non-convex but the precise nature of this nonconvexity is still an active area of research… (voir plus). In this work, we study the loss landscape of deep networks through the eigendecompositions of their Hessian matrix. In particular, we examine how important the negative eigenvalues are and the benefits one can observe in handling them appropriately.
We propose a neural language model capable of unsupervised syntactic structure induction. The model leverages the structure information to f… (voir plus)orm better semantic representations and better language modeling. Standard recurrent neural networks are limited by their structure and fail to efficiently use syntactic information. On the other hand, tree-structured recursive networks usually require additional structural supervision at the cost of human expert annotation. In this paper, We propose a novel neural language model, called the Parsing-Reading-Predict Networks (PRPN), that can simultaneously induce the syntactic structure from unannotated sentences and leverage the inferred structure to learn a better language model. In our model, the gradient can be directly back-propagated from the language model loss into the neural parsing network. Experiments show that the proposed model can discover the underlying syntactic structure and achieve state-of-the-art performance on word/character-level language model tasks.
