Publications

Half Search Space is All You Need
Pavel Rumiantsev
Mark J. Coates
2025-05-18
ArXiv (prépublication)
doi.org
arxiv.org
Learning active tactile perception through belief-space control
Jean-François Tremblay
Johanna Hansen
David Meger
Francois Hogan
Gregory Dudek
Robot operating in an open world can encounter novel objects with unknown physical properties, such as mass, friction, or size. It is desira… (voir plus)ble to be able to sense those property through contact-rich interaction, before performing downstream tasks with the objects. We propose a method for autonomously learning active tactile perception policies, by learning a generative world model leveraging a differentiable bayesian filtering algorithm, and designing an information- gathering model predictive controller. We test the method on three simulated tasks: mass estimation, height estimation and toppling height estimation. Our method is able to discover policies which gather information about the desired property in an intuitive manner.
2025-05-18
2025 IEEE International Conference on Robotics and Automation (ICRA) (publié)
doi.org
openreview.net
PedMedQA: Comparing Large Language Model Accuracy in Pediatric and Adult Medicine
Nikhil Jaiswal
Yuanchao Ma
Bertrand Lebouché
Dan Poenaru
Esli Osmanlliu
Large language models (LLMs) have the potential to revolutionize healthcare, including aiding in clinical decision-making. However, recent w… (voir plus)ork suggests that LLM performance in pediatric cases may be weaker than adult cases. A key limitation in evaluating these differences is the lack of pediatric-specific benchmarks, making it difficult to systematically assess how well LLMs generalize to pediatric scenarios.
2025-05-18
Pediatrics Open Science (publié)
doi.org
RobusTAD: reference panel based annotation of nested topologically associating domains
Yanlin Zhang
Rola Dali
Mathieu Blanchette
Topologically associating domains (TADs) are fundamental units of 3D genomes and play essential roles in gene regulation. Hi-C data suggests… (voir plus) a hierarchical organization of TADs. Accurately annotating nested TADs from Hi-C data remains challenging, both in terms of the precise identification of boundaries and the correct inference of hierarchies. While domain boundary is relatively well conserved across cells, few approaches have taken advantage of this fact. Here, we present RobusTAD to annotate TAD hierarchies. It incorporates additional Hi-C data to refine boundaries annotated from the study sample. RobusTAD outperforms existing tools at boundary and domain annotation across several benchmarking tasks. Supplementary Information The online version contains supplementary material available at 10.1186/s13059-025-03568-9.
2025-05-18
Genome Biology (publié)
doi.org
Seeing the Unseen: How EMoE Unveils Bias in Text-to-Image Diffusion Models
Lucas Berry
Axel Brando
Wei-Di Chang
Juan Higuera
David Meger
2025-05-18
ArXiv (prépublication)
doi.org
openreview.net
Topological mapping for traversability-aware long-range navigation in off-road terrain
Jean-François Tremblay
Julie Alhosh
Louis Petit
Faraz Lotfi
Lara Landauro
David Meger
Autonomous robots navigating in off-road terrain like forests open new opportunities for automation. While off-road navigation has been stud… (voir plus)ied, existing work often relies on clearly delineated pathways. We present a method allowing for long-range planning, exploration and low-level control in unknown off-trail forest terrain, using vision and GPS only. We represent outdoor terrain with a topological map, which is a set of panoramic snapshots connected with edges containing traversability information. A novel traversability analysis method is demonstrated, predicting the existence of a safe path towards a target in an image. Navigating between nodes is done using goal-conditioned behavior cloning, leveraging the power of a pretrained vision transformer. An exploration planner is presented, efficiently covering an unknown off-road area with unknown traversability using a frontiers-based approach. The approach is successfully deployed to autonomously explore two 400 m2 forest sites unseen during training, in difficult conditions for navigation.
2025-05-18
2025 IEEE International Conference on Robotics and Automation (ICRA) (publié)
doi.org
arxiv.org
FedWeight: mitigating covariate shift of federated learning on electronic health records data through patients re-weighting
He Zhu
Jun Bai
Na Li
Xiaoxiao Li
Dianbo Liu
David L. Buckeridge
Yue Li
Federated learning (FL) enables collaborative analysis of decentralized medical data while preserving patient privacy. However, the covariat… (voir plus)e shift from demographic and clinical differences can reduce model generalizability. We propose FedWeight, a novel FL framework that mitigates covariate shift by reweighting patient data from the source sites using density estimators, allowing the trained model to better align with the distribution of the target site. To support unsupervised applications, we introduce FedWeight ETM, a federated embedded topic model. We evaluated FedWeight in cross-site FL on the eICU dataset and cross-dataset FL between eICU and MIMIC III. FedWeight consistently outperforms standard FL baselines in predicting ICU mortality, ventilator use, sepsis diagnosis, and length of stay. SHAP-based interpretation and ETM-based topic modeling reveal improved identification of clinically relevant characteristics and disease topics associated with ICU readmission.
2025-05-16
NPJ Digital Medicine (publié)
doi.org
Bidirectional Information Flow (BIF) -- A Sample Efficient Hierarchical Gaussian Process for Bayesian Optimization
Juan D. Guerra
Thomas Garbay
Guillaume Lajoie
Marco Bonizzato
Hierarchical Gaussian Process (H-GP) models divide problems into different subtasks, allowing for different models to address each part, mak… (voir plus)ing them well-suited for problems with inherent hierarchical structure. However, typical H-GP models do not fully take advantage of this structure, only sending information up or down the hierarchy. This one-way coupling limits sample efficiency and slows convergence. We propose Bidirectional Information Flow (BIF), an efficient H-GP framework that establishes bidirectional information exchange between parent and child models in H-GPs for online training. BIF retains the modular structure of hierarchical models - the parent combines subtask knowledge from children GPs - while introducing top-down feedback to continually refine children models during online learning. This mutual exchange improves sample efficiency, enables robust training, and allows modular reuse of learned subtask models. BIF outperforms conventional H-GP Bayesian Optimization methods, achieving up to 4x and 3x higher
2025-05-15
arXiv (Cornell University) (prépublication)
doi.org
arxiv.org
Persistent signs of poisoning after massive drug ingestion: move the ultrasound probe to the stomach.
N. Lautrou-cabasson
H. Pirollet
C. Lombois
Guillaume Dumas
2025-05-14
Intensive Care Medicine (publié)
doi.org
The CASTOR mission
Patrick Côté
T. Woods
John Hutchings
J. Rhodes
R. Sánchez-Janssen
Alan D. Scott
J. Pazder
Melissa Amenouche
Michael Balogh
Simon Blouin
Alain Cournoyer
M. Drout
Nick Kuzmin
Katherine J. Mack
Laura Ferrarese
Wesley C. Fraser
S. Gallagher
Frederic J. Grandmont
Daryl Haggard
P. Harrison … (voir 160 de plus)
V. Hénault-Brunet
J. Kavelaars
V. Khatu
J. Roediger
J. Rowe
Marcin Sawicki
Jesper Skottfelt
Matt Taylor
L. van Waerbeke
Laurie Amen
Dhananjhay Bansal
Martin Bergeron
Toby Brown
Greg Burley
Hum Chand
Isaac Cheng
Ryan Cloutier
N. Dickson
Oleg Djazovski
Ivana Damjanov
James Doherty
K. Finner
Macarena García Del Valle Espinosa
Jennifer Glover
A. I. Gómez de Castro
Or Graur
Tim Hardy
Michelle Kao
D A Leahy
Deborah Lokhorst
A. I. Malz
Allison Man
Madeline A. Marshall
Sean McGee
Ryan McKenzie
Kai Michaud
Surhud S. More
David Morris
Patrick W. Morris
T. Moutard
Wasi Naqvi
Matthew Nicholl
G. Noirot
M. S. Oey
C. Opitom
Samir Salim
Bryan R. Scott
Charles Shapiro
Daniel Stern
Ashwin Subramaniam
David Thilke
I. Wevers
Dmitri Vorobiev
L. Y. Aaron Yung
Frédéric Zamkotsian
S. Aigrain
A. Alavi
Martin Barstow
Peter Bartosik
H. Bluhm
J. Bovy
Peter Cameron
R. Carlberg
J. Christiansen
Yuyang Chen
P. Crowther
Kristen Dage
Aaron Dotter
Patrick Dufour
Jean Dupuis
B. Dryer
A. Duara
Gwendolyn M. Eadie
Marielle R. Eduardo
V. Estrada-Carpenter
Sébastien Fabbro
A. Faisst
N. M. Ford
M. Fraser
Boris T. Gaensicke
Shashkiran Ganesh
Poshak Gandhi
Melissa L. Graham
R. Hamel
Martin Hellmich
John J. Hennessy
Kaitlyn Hessel
J. Heyl
Catherine Heymans
Yashar Hezaveh
Renée Hložek
Michael Hoenk
Andrew Holland
Eric Huff
Ian Hutchinson
I. Iwata
April D. Jewell
Doug Johnstone
Maia Jones
Todd J. Jones
D. Lang
J. Lapington
Justin Larivière
C. Lawlor-Forsyth
Denis Laurin
Charles Lee
Ronan Legin
Ting S. Li
S. Lim
B. Ludwig
Matt Kozun
V. M
Robert Mann
Alan McConnachie
Evan McDonough
S. Metchev
David R. Miller
Takashi Moriya
Cameron Morgan
Julio F. Navarro
Y. Nazé
Shouleh Nikzad
Vivek Oad
N. N.-Q. Ouellette
E. Pass
Will J. Percival
Laurence Perreault-Levasseur
Joe Postma
Nayyer Raza
G. T. Richards
Harvey Richer
Carmelle Robert
Erik Rosolowsky
J. Ruan
Sarah Rugheimer
S. Safi-Harb
Kanak Saha
Vicky Scowcroft
F. Sestito
Himanshu Sharma
James Sikora
G. Sivakoff
T. S. Sivarani
Patrick Smith
Warren Soh
R. Sorba
S. Subramanian
Hossen Teimoorinia
H. Teplitz
Shaylin Thadani
Shavon Thadani
Aaron Tohuvavohu
K. Venn
Nicholas Vieira
Jeremy J. Webb
P. Wiegert
Ryan Wierckx
Yanqin Wu
J. Yeung
S. K. Yi
2025-05-13
Journal of Astronomical Telescopes Instruments and Systems (publié)
doi.org
An Empirical Study of Pre-trained Model Selection for Out-of-Distribution Generalization and Calibration
Hiroki Naganuma
Ryuichiro Hataya
Kotaro Yoshida
Ioannis Mitliagkas
2025-05-12
TMLR (accepté)
openreview.net
openreview.net
Influence of scanning plane on Human Spinal Cord functional Magnetic Resonance echo planar imaging
Marta Moraschi
Silvia Tommasin
Laura Maugeri
Mauro DiNuzzo
Julien Cohen-Adad
Marco Masullo
Fabio Mangini
Lorenzo Giovannelli
Daniele Mascali
Tommaso Gili
Valerio Pisani
Ugo Nocentini
Federico Giove
Michela Fratini
BACKGROUND: Functional Magnetic Resonance Imaging (fMRI) is based on the Blood Oxygenation Level Dependent contrast and has been exploited f… (voir plus)or the indirect study of the neuronal activity within both the brain and the spinal cord. However, the interpretation of spinal cord fMRI (scfMRI) is still controversial and its diffusion is rather limited because of technical limitations. Overcoming these limitations would have a beneficial effect for the assessment and follow-up of spinal injuries and neurodegenerative diseases. PURPOSE: This study was aimed at systematically verify whether sagittal scanning in scfMRI using EPI readout is a viable alternative to the more common axial scanning, and at optimizing a pipeline for EPI-based scfMRI data analysis, based on Spinal Cord Toolbox (SCT). METHODS: Forty-five healthy subjects underwent MRI acquisition in a Philips Achieva 3T MRI scanner. T2*-weighted fMRI data were acquired using a GE-EPI sequence along sagittal and axial planes during an isometric motor task. Differences on benchmarks were assessed via paired two-sample t-test at p=0.05. RESULTS: We investigated the impact of the acquisition strategy by means of various metrics such as Temporal Signal to Noise Ratio (tSNR), Dice Coefficient to assess geometric distortions, Reproducibility and Sensitivity. tSNR was higher in axial than in sagittal scans, as well as reproducibility within the whole cord mask (t=7.4, p0.01) and within the GM mask (t=4.2, p0.01). The other benchmarks, associated with distortion and functional response, showed no differenc
2025-05-11
PLOS One (publié)
doi.org
arxiv.org