Peu importe la taille : démocratiser la découverte de protéines avec l'IA
Des chercheurs de Mila ont créé un puissant modèle de langage protéique à source ouverte plus compact et efficace afin de démocratiser la découverte de protéines.
La prochaine cohorte de notre programme, conçu pour fournir aux participant·e·s une compréhension fondamentale des technologies de l'IA, se déroulera à Ottawa les 28 et 29 novembre.
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Publications
Personalized Medicine for OSA Syndrome in a Nutshell: Conceptual Clarification for Integration.
Extractive summarization has been the main-stay of automatic summarization for decades. Despite all the progress, extractive summarizers sti… (voir plus)ll suffer from shortcomings including coreference issues arising from extracting sentences away from their original context in the source document. This affects the coherence and readability of extractive summaries. In this work, we propose a lightweight postediting step for extractive summaries that centers around a single linguistic decision: the definiteness of noun phrases. We conduct human evaluation studies that show that human expert judges substantially prefer the output of our proposed system over the original summaries. Moreover, based on an automatic evaluation study, we provide evidence for our system’s ability to generate linguistic decisions that lead to improved extractive summaries. We also draw insights about how the automatic system is exploiting some local cues related to the writing style of the main article texts or summary texts to make the decisions, rather than reasoning about the contexts pragmatically.
2021-01-01
Conference on Empirical Methods in Natural Language Processing (publié)
Data efficiency is a key challenge for deep reinforcement learning. We address this problem by using unlabeled data to pretrain an encoder w… (voir plus)hich is then finetuned on a small amount of task-specific data. To encourage learning representations which capture diverse aspects of the underlying MDP, we employ a combination of latent dynamics modelling and unsupervised goal-conditioned RL. When limited to 100k steps of interaction on Atari games (equivalent to two hours of human experience), our approach significantly surpasses prior work combining offline representation pretraining with task-specific finetuning, and compares favourably with other pretraining methods that require orders of magnitude more data. Our approach shows particular promise when combined with larger models as well as more diverse, task-aligned observational data -- approaching human-level performance and data-efficiency on Atari in our best setting.
Law enforcement can detect human trafficking (HT) in online escort websites by analyzing suspicious clusters of connected ads. Given such cl… (voir plus)usters, how can we interactively visualize potential evidence for law enforcement and domain experts? We present TRAFFICVIS, which, to our knowledge, is the first interface for cluster-level HT detection and labeling. It builds on state-of-the-art HT clustering algorithms by incorporating metadata as a signal of organized and potentially suspicious activity. Also, domain experts can label clusters as HT, spam, and more, efficiently creating labeled datasets to enable further HT research. TRAFFICVIS has been built in close collaboration with domain experts, who estimate that TRAFFICVIS provides a median 36x speedup over manual labeling.
—We revisit the Thompson sampling algorithm to control an unknown linear quadratic (LQ) system recently proposed by Ouyang et al. [1]. The… (voir plus) regret bound of the algorithm was derived under a technical assumption on the induced norm of the closed loop system. In this technical note, we show that by making a minor modification in the algorithm (in particular, ensuring that an episode does not end too soon), this technical assumption on the induced norm can be replaced by a milder assumption in terms of the spectral radius of the closed loop system. The modified algorithm has the same Bayesian regret of ˜ O ( √ T ) , where T is the time-horizon and the ˜ O ( · ) notation hides logarithmic terms in T .
In recent years, the Transformer architecture has proven to be very successful in sequence processing, but its application to other data str… (voir plus)uctures, such as graphs, has remained limited due to the difficulty of properly defining positions. Here, we present the
Real world networks often evolve in complex ways over time. Understanding anomalies in dynamic networks is crucial for applications such as … (voir plus)traffic accident detection, intrusion identification and detection of ecosystem disturbances. In this work, we focus on the problem of change point detection in dynamic graphs. The goal is to identify time steps where the graph structure deviates significantly from the norm. Despite empirical success of recent methods, building a change point detection method for real world dynamic graphs, which often scale to millions of nodes, remains an open question. To fill this gap, we propose LADdos, a scalable method for change point detection in dynamic graphs. LADdos brings together ideas from two recent works: an accurate change point detection method for graphs called LAD [10] which detects the changes in the full Laplacian spectrum of the graph in each timestamp, and the general framework of network density of states (DOS) [5] which models the distribution of the singular values through efficient approximation methods. In experiments with two common graph models –the Stochastic Block Model (SBM) and the Barabási-Albert (BA) model – we show that LADdos has equal performance to LAD, which is the current state-of-the-art, while being orders of magnitude faster. For instance, on a dynamic graph with total 21 million edges over 150 timestamps, LADdos achieves 100x speedup when compared to LAD.
Humans and animals have the ability to reason and make predictions about different courses of action at many time scales. In reinforcement l… (voir plus)earning, option models (Sutton, Precup \& Singh, 1999; Precup, 2000) provide the framework for this kind of temporally abstract prediction and reasoning. Natural intelligent agents are also able to focus their attention on courses of action that are relevant or feasible in a given situation, sometimes termed affordable actions. In this paper, we define a notion of affordances for options, and develop temporally abstract partial option models, that take into account the fact that an option might be affordable only in certain situations. We analyze the trade-offs between estimation and approximation error in planning and learning when using such models, and identify some interesting special cases. Additionally, we empirically demonstrate the ability to learn both affordances and partial option models online resulting in improved sample efficiency and planning time in the Taxi domain.
Natural language processing systems such as dialogue agents should be able to reason about other people’s beliefs, intentions and desires.… (voir plus) This capability, called theory of mind (ToM), is crucial, as it allows a model to predict and interpret the needs of users based on their mental states. A recent line of research evaluates the ToM capability of existing memoryaugmented neural models through questionanswering. These models perform poorly on false belief tasks where beliefs differ from reality, especially when the dataset contains distracting sentences. In this paper, we propose a new temporally informed approach for improving the ToM capability of memory-augmented neural models. Our model incorporates priors about the entities’ minds and tracks their mental states as they evolve over time through an extended passage. It then responds to queries through textual time travel—i.e., by accessing the stored memory of an earlier time step. We evaluate our model on ToM datasets and find that this approach improves performance, particularly by correcting the predicted mental states to match the false belief.
2021-01-01
Conference on Empirical Methods in Natural Language Processing (publié)
Combinatorial optimization is a well-established area in operations research and computer science. Until recently, its methods have focused … (voir plus)on solving problem instances in isolation, ignoring that they often stem from related data distributions in practice. However, recent years have seen a surge of interest in using machine learning as a new approach for solving combinatorial problems, either directly as solvers or by enhancing exact solvers. Based on this context, the ML4CO aims at improving state-of-the-art combinatorial optimization solvers by replacing key heuristic components. The competition featured three challenging tasks: finding the best feasible solution, producing the tightest optimality certificate, and giving an appropriate solver configuration. Three realistic datasets were considered: balanced item placement, workload apportionment, and maritime inventory routing. This last dataset was kept anonymous for the contestants.
Authorship attribution is the problem of identifying the most plausible author of an anonymous text from a set of candidate authors. Researc… (voir plus)hers have investigated same-topic and cross-topic scenarios of authorship attribution, which differ according to whether unseen topics are used in the testing phase. However, neither scenario allows us to explain whether errors are caused by failure to capture authorship style, by the topic shift or by other factors. Motivated by this, we propose the topic confusion task, where we switch the author-topic config-uration between training and testing set. This setup allows us to probe errors in the attribution process. We investigate the accuracy and two error measures: one caused by the models’ confusion by the switch because the features capture the topics, and one caused by the features’ inability to capture the writing styles, leading to weaker models. By evaluating different features, we show that stylometric features with part-of-speech tags are less susceptible to topic variations and can increase the accuracy of the attribution process. We further show that combining them with word-level n - grams can outperform the state-of-the-art technique in the cross-topic scenario. Finally, we show that pretrained language models such as BERT and RoBERTa perform poorly on this task, and are outperformed by simple n -gram features.