Peu importe la taille : démocratiser la découverte de protéines avec l'IA
Des chercheurs de Mila ont créé un puissant modèle de langage protéique à source ouverte plus compact et efficace afin de démocratiser la découverte de protéines.
La prochaine cohorte de notre programme, conçu pour fournir aux participant·e·s une compréhension fondamentale des technologies de l'IA, se déroulera à Ottawa les 28 et 29 novembre.
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Publications
Assessing the Generalization Capabilities of Neural Machine Translation Models for SPARQL Query Generation
Attention has become a common ingredient in deep learning architectures. It adds a dynamical selection of information on top of the static s… (voir plus)election of information supported by weights. In the same way, we can imagine a higher-order informational filter built on top of attention: an Attention Schema (AS), namely, a descriptive and predictive model of attention. In cognitive neuroscience, Attention Schema Theory (AST) supports this idea of distinguishing attention from AS. A strong prediction of this theory is that an agent can use its own AS to also infer the states of other agents' attention and consequently enhance coordination with other agents. As such, multi-agent reinforcement learning would be an ideal setting to experimentally test the validity of AST. We explore different ways in which attention and AS interact with each other. Our preliminary results indicate that agents that implement the AS as a recurrent internal control achieve the best performance. In general, these exploratory experiments suggest that equipping artificial agents with a model of attention can enhance their social intelligence.
GFlowNets have exhibited promising performance in generating diverse candidates with high rewards. These networks generate objects increment… (voir plus)ally and aim to learn a policy that assigns probability of sampling objects in proportion to rewards. However, the current training pipelines of GFlowNets do not consider the presence of isomorphic actions, which are actions resulting in symmetric or isomorphic states. This lack of symmetry increases the amount of samples required for training GFlowNets and can result in inefficient and potentially incorrect flow functions. As a consequence, the reward and diversity of the generated objects decrease. In this study, our objective is to integrate symmetries into GFlowNets by identifying equivalent actions during the generation process. Experimental results using synthetic data demonstrate the promising performance of our proposed approaches.
GFlowNets have exhibited promising performance in generating diverse candidates with high rewards. These networks generate objects increment… (voir plus)ally and aim to learn a policy that assigns probability of sampling objects in proportion to rewards. However, the current training pipelines of GFlowNets do not consider the presence of isomorphic actions, which are actions resulting in symmetric or isomorphic states. This lack of symmetry increases the amount of samples required for training GFlowNets and can result in inefficient and potentially incorrect flow functions. As a consequence, the reward and diversity of the generated objects decrease. In this study, our objective is to integrate symmetries into GFlowNets by identifying equivalent actions during the generation process. Experimental results using synthetic data demonstrate the promising performance of our proposed approaches.
Understanding causal relationships within Gene Regulatory Networks (GRNs) is essential for unraveling the gene interactions in cellular proc… (voir plus)esses. However, causal discovery in GRNs is a challenging problem for multiple reasons including the existence of cyclic feedback loops and uncertainty that yields diverse possible causal structures. Previous works in this area either ignore cyclic dynamics (assume acyclic structure) or struggle with scalability. We introduce Swift-DynGFN as a novel framework that enhances causal structure learning in GRNs while addressing scalability concerns. Specifically, Swift-DynGFN exploits gene-wise independence to boost parallelization and to lower computational cost. Experiments on real single-cell RNA velocity and synthetic GRN datasets showcase the advancement in learning causal structure in GRNs and scalability in larger systems.
To ensure robustness and generalization to real-world scenarios, test-time adaptation has been recently studied as an approach to adjust mod… (voir plus)els to a new data distribution during inference. Test-time batch normalization is a simple and popular method that achieved compelling performance on domain shift benchmarks by recalculating batch normalization statistics on test batches. However, in many practical applications this technique is vulnerable to label distribution shifts. We propose to tackle this challenge by only selectively adapting channels in a deep network, minimizing drastic adaptation that is sensitive to label shifts. We find that adapted models significantly improve the performance compared to the baseline models and counteract unknown label shifts.
Compositionality is an important feature of discrete symbolic systems, such as language and programs, as it enables them to have infinite ca… (voir plus)pacity despite a finite symbol set. It serves as a useful abstraction for reasoning in both cognitive science and in AI, yet the interface between continuous and symbolic processing is often imposed by fiat at the algorithmic level, such as by means of quantization or a softmax sampling step. In this work, we explore how discretization could be implemented in a more neurally plausible manner through the modeling of attractor dynamics that partition the continuous representation space into basins that correspond to sequences of symbols. Building on established work in attractor networks and introducing novel training methods, we show that imposing structure in the symbolic space can produce compositionality in the attractor-supported representation space of rich sensory inputs. Lastly, we argue that our model exhibits the process of an information bottleneck that is thought to play a role in conscious experience, decomposing the rich information of a sensory input into stable components encoding symbolic information.
The ability to plan at many different levels of abstraction enables agents to envision the long-term repercussions of their decisions and th… (voir plus)us enables sample-efficient learning. This becomes particularly beneficial in complex environments from high-dimensional state space such as pixels, where the goal is distant and the reward sparse. We introduce Forecaster, a deep hierarchical reinforcement learning approach which plans over high-level goals leveraging a temporally abstract world model. Forecaster learns an abstract model of its environment by modelling the transitions dynamics at an abstract level and training a world model on such transition. It then uses this world model to choose optimal high-level goals through a tree-search planning procedure. It additionally trains a low-level policy that learns to reach those goals. Our method not only captures building world models with longer horizons, but also, planning with such models in downstream tasks. We empirically demonstrate Forecaster's potential in both single-task learning and generalization to new tasks in the AntMaze domain.
In order for autonomous mobile robots to navigate in human spaces, they must abide by our social norms. Reinforcement learning (RL) has emer… (voir plus)ged as an effective method to train robot sequential decision-making policies that are able to respect these norms. However, a large portion of existing work in the field conducts both RL training and testing in simplistic environments. This limits the generalization potential of these models to unseen environments, and undermines the meaningfulness of their reported results. We propose a method to improve the generalization performance of RL social navigation methods using curriculum learning. By employing multiple environment types and by modeling pedestrians using multiple dynamics models, we are able to progressively diversify and escalate difficulty in training. Our results show that the use of curriculum learning in training can be used to achieve better generalization performance than previous training methods. We also show that results presented in many existing state-of-the art RL social navigation works do not evaluate their methods outside of their training environments, and thus do not reflect their policies' failure to adequately generalize to out-of-distribution scenarios. In response, we validate our training approach on larger and more crowded testing environments than those used in training, allowing for more meaningful measurements of model performance.