Portrait de Hamza Abdelhedi

Hamza Abdelhedi

Doctorat - UdeM
Superviseur⋅e principal⋅e
Sujets de recherche
Apprentissage automatique médical
Apprentissage de représentations
Apprentissage profond
IA inspirée du cerveau
Imagerie fonctionnelle du cerveau
Modèles de fondation
NeuroIA
Neurosciences
Neurosciences computationnelles
Science cognitive

Publications

Coord2Region: A Python Package for Mapping 3D Brain Coordinates to Atlas Labels, Literature, and AI Summaries
Yorguin-Jose Mantilla-Ramos
Sina Esmaeili
Annalisa Pascarella
Vanessa Hadid
Karim Jerbi CoCo Lab
We present Coord2Region, an open-source Python package that streamlines coordinate-based neuroimaging workflows by automatically mapping 3D … (voir plus)brain coordinates (e.g., MNI or Talairach) to anatomical regions across multiple atlases. The package links mapped coordinates to meta-analytic resources via the Neuroimaging Meta-Analysis Research Environment (NiMARE) , providing direct integration with Neurosynth and NeuroQuery. This directly connects coordinates and regions to the broader neuroimaging literature. In addition to atlas-based labeling and literature retrieval, Coord2Region offers an optional large language model (LLM) functionality that generates text summaries of linked studies and illustrative images of queried regions. These AI-assisted features are intended to support interpretation and exploration, while remaining clearly complementary to peer-reviewed literature and established neuroimaging tools. Coord2Region provides a unified pipeline with a robust command-line interface, flexible dataset management, and provider-agnostic LLM utilities, and it supports both single-coordinate and high-throughput batch queries with nearest-region fallback for volume and surface atlases. Furthermore, Coord2Region includes a web interface for interactive configuration (via JSON Schema forms) and cloud execution (via Hugging Face), enabling users to build YAML configurations and run analyses in-browser without local installation. Together, these capabilities lower friction, reduce manual errors, and improve reproducibility in coordinate-centric neuroimaging workflows, promoting more robust and transparent research practices.
Intrinsic Neural Oscillations Predict Verbal Learning Performance and Encoding Strategy Use
Victor Oswald
Mathieu Landry
Sarah Lippé
Philippe Robaey
The 2025 PNPL Competition: Speech Detection and Phoneme Classification in the LibriBrain Dataset
Gilad Landau
Miran Ozdogan
Gereon Elvers
Francesco Mantegna
Pratik Somaiya
Dulhan Hansaja Jayalath
Luisa Kurth
Teyun Kwon
Brendan Shillingford
Greg Farquhar
Minqi Jiang
M. Woolrich
Natalie Voets
Oiwi Parker Jones
The advance of speech decoding from non-invasive brain data holds the potential for profound societal impact. Among its most promising appli… (voir plus)cations is the restoration of communication to paralysed individuals affected by speech deficits such as dysarthria, without the need for high-risk surgical interventions. The ultimate aim of the 2025 PNPL competition is to produce the conditions for an"ImageNet moment"or breakthrough in non-invasive neural decoding, by harnessing the collective power of the machine learning community. To facilitate this vision we present the largest within-subject MEG dataset recorded to date (LibriBrain) together with a user-friendly Python library (pnpl) for easy data access and integration with deep learning frameworks. For the competition we define two foundational tasks (i.e. Speech Detection and Phoneme Classification from brain data), complete with standardised data splits and evaluation metrics, illustrative benchmark models, online tutorial code, a community discussion board, and public leaderboard for submissions. To promote accessibility and participation the competition features a Standard track that emphasises algorithmic innovation, as well as an Extended track that is expected to reward larger-scale computing, accelerating progress toward a non-invasive brain-computer interface for speech.
The 2025 PNPL Competition: Speech Detection and Phoneme Classification in the LibriBrain Dataset
Gilad Landau
Miran Ozdogan
Gereon Elvers
Francesco Mantegna
Pratik Somaiya
Dulhan Hansaja Jayalath
Luisa Kurth
Teyun Kwon
Brendan Shillingford
Greg Farquhar
Minqi Jiang
M. Woolrich
Natalie Voets
Oiwi Parker Jones
The advance of speech decoding from non-invasive brain data holds the potential for profound societal impact. Among its most promising appli… (voir plus)cations is the restoration of communication to paralysed individuals affected by speech deficits such as dysarthria, without the need for high-risk surgical interventions. The ultimate aim of the 2025 PNPL competition is to produce the conditions for an"ImageNet moment"or breakthrough in non-invasive neural decoding, by harnessing the collective power of the machine learning community. To facilitate this vision we present the largest within-subject MEG dataset recorded to date (LibriBrain) together with a user-friendly Python library (pnpl) for easy data access and integration with deep learning frameworks. For the competition we define two foundational tasks (i.e. Speech Detection and Phoneme Classification from brain data), complete with standardised data splits and evaluation metrics, illustrative benchmark models, online tutorial code, a community discussion board, and public leaderboard for submissions. To promote accessibility and participation the competition features a Standard track that emphasises algorithmic innovation, as well as an Extended track that is expected to reward larger-scale computing, accelerating progress toward a non-invasive brain-computer interface for speech.
Artificial Neural Networks for Magnetoencephalography: A review of an emerging field
Magnetoencephalography (MEG) is a cutting-edge neuroimaging technique that measures the intricate brain dynamics underlying cognitive proces… (voir plus)ses with an unparalleled combination of high temporal and spatial precision. MEG data analytics has always relied on advanced signal processing and mathematical and statistical tools for various tasks ranging from data cleaning to probing the signals' rich dynamics and estimating the neural sources underlying the surface-level recordings. Like in most domains, the surge in Artificial Intelligence (AI) has led to the increased use of Machine Learning (ML) methods for MEG data classification. More recently, an emerging trend in this field is using Artificial Neural Networks (ANNs) to address many MEG-related tasks. This review provides a comprehensive overview of how ANNs are being used with MEG data from three vantage points: First, we review work that employs ANNs for MEG signal classification, i.e., for brain decoding. Second, we report on work that has used ANNs as putative models of information processing in the human brain. Finally, we examine studies that use ANNs as techniques to tackle methodological questions in MEG, including artifact correction and source estimation. Furthermore, we assess the current strengths and limitations of using ANNs with MEG and discuss future challenges and opportunities in this field. Finally, by establishing a detailed portrait of the field and providing practical recommendations for the future, this review seeks to provide a helpful reference for both seasoned MEG researchers and newcomers to the field who are interested in using ANNs to enhance the exploration of the complex dynamics of the human brain with MEG.
Artificial Neural Networks for Magnetoencephalography: A review of an emerging field
Magnetoencephalography (MEG) is a cutting-edge neuroimaging technique that measures the intricate brain dynamics underlying cognitive proces… (voir plus)ses with an unparalleled combination of high temporal and spatial precision. MEG data analytics has always relied on advanced signal processing and mathematical and statistical tools for various tasks ranging from data cleaning to probing the signals' rich dynamics and estimating the neural sources underlying the surface-level recordings. Like in most domains, the surge in Artificial Intelligence (AI) has led to the increased use of Machine Learning (ML) methods for MEG data classification. More recently, an emerging trend in this field is using Artificial Neural Networks (ANNs) to address many MEG-related tasks. This review provides a comprehensive overview of how ANNs are being used with MEG data from three vantage points: First, we review work that employs ANNs for MEG signal classification, i.e., for brain decoding. Second, we report on work that has used ANNs as putative models of information processing in the human brain. Finally, we examine studies that use ANNs as techniques to tackle methodological questions in MEG, including artifact correction and source estimation. Furthermore, we assess the current strengths and limitations of using ANNs with MEG and discuss future challenges and opportunities in this field. Finally, by establishing a detailed portrait of the field and providing practical recommendations for the future, this review seeks to provide a helpful reference for both seasoned MEG researchers and newcomers to the field who are interested in using ANNs to enhance the exploration of the complex dynamics of the human brain with MEG.
Class imbalance should not throw you off balance: Choosing the right classifiers and performance metrics for brain decoding with imbalanced data
Yorguin-Jose Mantilla-Ramos
Charlotte Maschke
Yann Harel
Anirudha Kemtur
Loubna Mekki Berrada
Myriam Sahraoui
Tammy Young
Antoine Bellemare‐Pepin
Clara El Khantour
Mathieu Landry
Annalisa Pascarella
Vanessa Hadid
Etienne Combrisson
Jordan O’Byrne