Publications

Meditation induces shifts in neural oscillations, brain complexity, and critical dynamics: novel insights from MEG
Annalisa Pascarella
David Meunier
Jordan O'Byrne
Tarek Lajnef
Antonino Raffone
Roberto Guidotti
Vittorio Pizzella
Laura Marzetti
While the beneficial impacts of meditation are increasingly acknowledged, its underlying neural mechanisms remain poorly understood. We exam… (see more)ined the electrophysiological brain signals of expert Buddhist monks during two established meditation methods known as Samatha and Vipassana, which employ focused attention and open-monitoring technique. By combining source-space magnetoencephalography with advanced signal processing and machine learning tools, we provide an unprecedented assessment of the role of brain oscillations, complexity, and criticality in meditation. In addition to power spectral density, we computed long-range temporal correlations (LRTC), deviation from criticality coefficient (DCC), Lempel–Ziv complexity, 1/f slope, Higuchi fractal dimension, and spectral entropy. Our findings indicate increased levels of neural signal complexity during both meditation practices compared to the resting state, alongside widespread reductions in gamma-band LRTC and 1/f slope. Importantly, the DCC analysis revealed a separation between Samatha and Vipassana, suggesting that their distinct phenomenological properties are mediated by specific computational characteristics of their dynamic states. Furthermore, in contrast to most previous reports, we observed a decrease in oscillatory gamma power during meditation, a divergence likely due to the correction of the power spectrum by the 1/f slope, which could reduce potential confounds from broadband 1/f activity. We discuss how these results advance our comprehension of the neural processes associated with focused attention and open-monitoring meditation practices.
Biotuner: A python toolbox integrating music theory and signal processing for harmonic analysis of physiological and natural time series
Antoine Bellemare-Pepin
The Biotuner Toolbox is an open-source Python toolbox for biosignals that integrates concepts from neuroscience, music theory, and signal pr… (see more)ocessing. It introduces a harmonic perspective on physiological oscillations by applying musical constructs such as consonance, rhythm, and scale construction. The core biotuner_object processes neural, cardiac, and auditory time series, providing a unified interface for extracting spectral peaks, computing harmonicity metrics, and supporting downstream analyses. Companion modules extend harmonic analyses across temporal (time-resolved harmonicity), spatial (harmonic connectivity), and spectral (harmonic spectrum) dimensions. Biotuner identifies harmonic structure across different biosignals, revealing significant variations in harmonicity between physiological states. Specifically, the toolbox extracts spectral peaks from complex signals using multiple algorithms, ensuring robust peak detection under varying signal-to-noise ratios. Moreover, we show how harmonicity metrics change across distinct sleep stages and capture variations in the slopes of the aperiodic (1/f) component of the power spectrum. Biotuner provides an extensible framework that unifies music-theoretic constructs with biosignal processing, enabling hypothesis-driven analyses for researchers and, in parallel, creative exploration of complex natural patterns for artists.
The spatially-resolved effect of mergers on the stellar mass assembly of MaNGA galaxies
Eirini Angeloudi
Marc Huertas-Company
Jesús Falcón-Barroso
Alina Boecker
Understanding the origin of stars within a galaxy - whether formed in-situ or accreted from other galaxies (ex-situ) - is key to constrainin… (see more)g its evolution. Spatially resolving these components provides crucial insights into a galaxy's mass assembly history. We aim to predict the spatial distribution of ex-situ stellar mass fraction in MaNGA galaxies, and to identify distinct assembly histories based on the radial gradients of these predictions in the central regions. We employ a diffusion model trained on mock MaNGA analogs (MaNGIA), derived from the TNG50 cosmological simulation. The model learns to predict the posterior distribution of resolved ex-situ stellar mass fraction maps, conditioned on stellar mass density, velocity, and velocity dispersion gradient maps. After validating the model on an unseen test set from MaNGIA, we apply it to MaNGA galaxies to infer the spatially-resolved distribution of their ex-situ stellar mass fractions - i.e. the fraction of stellar mass in each spaxel originating from mergers. We identify four broad categories of ex-situ mass distributions: flat gradient, in-situ dominated; flat gradient, ex-situ dominated; positive gradient; and negative gradient. The vast majority of MaNGA galaxies fall in the first category - flat gradients with low ex-situ fractions - confirming that in-situ star formation is the main assembly driver for low- to intermediate-mass galaxies. At high stellar masses, the ex-situ maps are more diverse, highlighting the key role of mergers in building the most massive systems. Ex-situ mass distributions correlate with morphology, star-formation activity, stellar kinematics, and environment, indicating that accretion history is a primary factor shaping massive galaxies. Finally, by tracing their assembly histories in TNG50, we link each class to distinct merger scenarios, ranging from secular evolution to merger-dominated growth.
Determinants of pleiotropy and monotonic gene dosage responses across human traits
Sayeh Kazem
Kuldeep Kumar
Josephine Mollon
Thomas Renne
Laura M. Schultz
Emma E.M. Knowles
Worrawat Engchuan
Omar Shanta
Bhooma Thiruvahindrapuram
Jeffrey R. MacDonald
Celia M. T. Greenwood
Stephen W. Scherer
Laura Almasy
Jonathan Sebat
David C. Glahn
Sébastien Jacquemont
While pleiotropic effects of gene dosage are of particular relevance for comorbidities observed in the developmental pediatric and psychiatr… (see more)ic clinic, the biological processes underlying such pleiotropy remain unknown. We developed a new functional burden analysis (FunBurd) to investigate all CNVs, genome-wide, beyond well-studied recurrent CNVs. In ~500,000 UK-Biobank participants, we tested the association between 43 traits and CNVs disrupting 172 tissue or cell-type gene-sets. CNVs affected all traits. Pleiotropy was correlated with genetic constraint and was higher in the brain compared to non-brain functions, even after normalizing for genetic constraint. The levels of pleiotropy, measured by burden correlation, were similar in deletions and loss-of-function SNVs and higher compared to common variants and duplications. Gene sets under high genetic constraint showed less monotonic gene dosage responses across traits. Even in the absence of a monotonic response, we observed a negative correlation between deletion and duplication effect sizes across most traits. Overall, functional gene sets are preferentially associated with a given trait when either deleted or duplicated, but rarely both.
Risk factors for catastrophic healthcare expenditure and high economic burden for children with anorectal malformations in Southwestern Uganda
Felix Oyania
Caroline Q. Stephens
Sarah Ullrich
Amy M. Shui
Meera Kotagal
Godfrey Zari Rukundo
Joseph Ngonzi
Ava Yap
Francis Bajunirwe
Doruk Ozgediz
Towards an informational account of interpersonal coordination
Edoardo Chidichimo
Andrea Luppi
Pedro A. Mediano
Victoria Leong
Andres Canales-Johnson
Richard A.I. Bethlehem

Human sociality is grounded in the dynamic coordination of individuals as they interact with one another. Indeed, interpersonal coordinat… (see more)ion on various levels—neural, behavioural, physiological, affective, linguistic—are hallmarks of successful social communication and cooperation. However, describing these complex, interdependent dynamics has been limited by current methodological approaches, owing to a restrictive repertoire of tools and the absence of a unified, standardised methodological framework. Here, we identify information theory, the mathematical theory of communication, as a particularly well-suited conceptual framework to address this shortfall, given its appropriate sensitivity to complex dynamics, including potential nonlinearity and higher-order interactions, and its data-driven, model-agnostic foundations. With deep roots in computational, cognitive, and systems neuroscience, the formal introduction of information-theoretic quantities and methods into the study of interpersonal coordination is perhaps overdue. This Perspective advances the case for a unified information-theoretic framework for the field while paving the path for a new generation of empirically testable, theoretically grounded research questions.

Excitatory-Inhibitory Dynamics in Adaptive Decision-Making
From Technical Excellence to Practical Adoption: Lessons Learned Building an ML-Enhanced Trace Analysis Tool
Kaveh Shahedi
Matthew Khouzam
Heng Li
Maxime Lamothe
Higher Order Transformers: Efficient Attention Mechanism for Tensor Structured Data
Transformers are now ubiquitous for sequence modeling tasks, but their extension to multi-dimensional data remains a challenge due to the qu… (see more)adratic cost of the attention mechanism. In this paper, we propose Higher-Order Transformers (HOT), a novel architecture designed to efficiently process data with more than two axes, i.e. higher-order tensors. To address the computational challenges associated with high-order tensor attention, we introduce a novel Kronecker factorized attention mechanism that reduces the attention cost to quadratic in each axis' dimension, rather than quadratic in the total size of the input tensor. To further enhance efficiency, HOT leverages kernelized attention, reducing the complexity to linear. This strategy maintains the model's expressiveness while enabling scalable attention computation. We validate the effectiveness of HOT on two high-dimensional tasks, including multivariate time series forecasting, and 3D medical image classification. Experimental results demonstrate that HOT achieves competitive performance while significantly improving computational efficiency, showcasing its potential for tackling a wide range of complex, multi-dimensional data.
Self-Supervised Visual Prompting for Cross-Domain Road Damage Detection
Xi Xiao
Zhuxuanzi Wang
Mingqiao Mo
Chen Liu
Chenrui Ma
Yanshu Li
Xiao Wang
Tianyang Wang
The deployment of automated pavement defect detection is often hindered by poor cross-domain generalization. Supervised detectors achieve st… (see more)rong in-domain accuracy but require costly re-annotation for new environments, while standard self-supervised methods capture generic features and remain vulnerable to domain shift. We propose \ours, a self-supervised framework that \emph{visually probes} target domains without labels. \ours introduces a Self-supervised Prompt Enhancement Module (SPEM), which derives defect-aware prompts from unlabeled target data to guide a frozen ViT backbone, and a Domain-Aware Prompt Alignment (DAPA) objective, which aligns prompt-conditioned source and target representations. Experiments on four challenging benchmarks show that \ours consistently outperforms strong supervised, self-supervised, and adaptation baselines, achieving robust zero-shot transfer, improved resilience to domain variations, and high data efficiency in few-shot adaptation. These results highlight self-supervised prompting as a practical direction for building scalable and adaptive visual inspection systems. Source code is publicly available: https://github.com/xixiaouab/PROBE/tree/main
Convolutional architectures are cortex-aligned de novo
Atlas Kazemian
Michael Bonner
Graph topological property recovery with heat and wave dynamics-based features on graphs
Dhananjay Bhaskar
Yanlei Zhang
Charles Xu
Xingzhi Sun
Oluwadamilola Fasina
Maximilian Nickel
Michael Perlmutter