Publications

Integrating Equity, Diversity, and Inclusion Throughout the Lifecycle of Artificial Intelligence for Better Health and Oral Health Care: A Workshop Summary.
Elham Emami
Samira Abbasgholizadeh-Rahimi
Milka Nyariro
Professors Elham Emami and Samira Rahimi organized and co-led an international interdisciplinary workshop in June 2023 at McGill University,… (see more) built upon an intersectoral approach addressing equity, diversity and inclusion within the field of AI.
2023-11-01
Journal (published)
pubmed.ncbi.nlm.nih.gov
Interoceptive technologies for psychiatric interventions: From diagnosis to clinical applications
Felix Schoeller
Adam Haar Horowitz
Abhinandan Jain
Pattie Maes
Nicco Reggente
Leonardo Christov-Moore
Giovanni Pezzulo
Laura Barca
Micah Allen
Roy Salomon
Mark Miller
Daniele Di Lernia
Giuseppe Riva
Manos Tsakiris
Moussa A. Chalah
Arno Klein
Ben Zhang
Teresa Garcia
Ursula Pollack
Marion Trousselard … (see 4 more)
Charles Verdonk
Guillaume Dumas
Vladimir Adrien
Karl J. Friston
2023-11-01
Neuroscience and Biobehavioral Reviews (published)
doi.org
Invasive Brain Computer Interface for Motor Restoration in Spinal Cord Injury: A Systematic Review.
Jordan J. Levett
Lior M. Elkaim
Farbod Niazi
Michael H. Weber
Christian Iorio-Morin
Marco Bonizzato
Alexander G. Weil
2023-11-01
Neuromodulation: Technology at the Neural Interface (published)
doi.org
Investigation of the Dosimetry Characteristics of the GAFCHROMIC® EBT3 Film Response to Alpha Particle Irradiation
Mélodie Cyr
Victor D. Martinez
S. Devic
Nada Tomic
David F. Lewis
Shirin A. Enger
2023-11-01
Journal of Physics: Conference Series (published)
doi.org
Lag-Llama: Towards Foundation Models for Time Series Forecasting
Kashif Rasul
Arjun Ashok
Andrew Robert Williams
Arian Khorasani
George Adamopoulos
Rishika Bhagwatkar
Marin Biloš
Hena Ghonia
Nadhir Hassen
Anderson Schneider
Sahil Garg
Alexandre Drouin
Nicolas Chapados
Yuriy Nevmyvaka
Irina Rish
Aiming to build foundation models for time-series forecasting and study their scaling behavior, we present here our work-in-progress on Lag-… (see more)Llama, a general-purpose univariate probabilistic time-series forecasting model trained on a large collection of time-series data. The model shows good zero-shot prediction capabilities on unseen "out-of-distribution" time-series datasets, outperforming supervised baselines. We use smoothly broken power-laws to fit and predict model scaling behavior. The open source code is made available at https://github.com/kashif/pytorch-transformer-ts.
2023-11-01
NeurIPS.cc/2023/Workshop/R0-FoMo (poster)
doi.org
openreview.net
Mining Mass Spectra for Peptide Facts
Jeremie Zumer
Sébastien Lemieux
The current mainstream software for peptide-centric tandem mass spectrometry data analysis can be categorized as either database-driven, whi… (see more)ch rely on a library of mass spectra to identify the peptide associated with novel query spectra, or de novo sequencing-based, which aim to find the entire peptide sequence by relying only on the query mass spectrum. While the first paradigm currently produces state-of-the-art results in peptide identification tasks, it does not inherently make use of information present in the query mass spectrum itself to refine identifications. Meanwhile, de novo approaches attempt to solve a complex problem in one go, without any search space constraints in the general case, leading to comparatively poor results. In this paper, we decompose the de novo problem into putatively easier subproblems, and we show that peptide identification rates of database-driven methods may be improved in terms of peptide identification rate by solving one such subsproblem without requiring a solution for the complete de novo task. We demonstrate this using a de novo peptide length prediction task as the chosen subproblem. As a first prototype, we show that a deep learning-based length prediction model increases peptide identification rates in the ProteomeTools dataset as part of an Pepid-based identification pipeline. Using the predicted information to better rank the candidates, we show that combining ideas from the two paradigms produces clear benefits in this setting. We propose that the next generation of peptide-centric tandem mass spectrometry identification methods should combine elements of these paradigms by mining facts “de novo; about the peptide represented in a spectrum, while simultaneously limiting the search space with a peptide candidates database.
2023-11-01
bioRxiv (preprint)
doi.org
Open design of a reproducible videogame controller for MRI and MEG
Yann Harel
André Cyr
Julie Boyle
Basile Pinsard
Jeremy Bernard
Marie-France Fourcade
Himanshu Aggarwal
Ana Fernanda Ponce
Bertrand Thirion
Karim Jerbi
Lune Bellec
2023-11-01
PLOS ONE (published)
doi.org
OpenForest: A data catalogue for machine learning in forest monitoring
Arthur Ouaknine
Teja Kattenborn
Etienne Lalibert'e
David Rolnick
2023-11-01
ArXiv (preprint)
doi.org
arxiv.org
SAGE: Smart home Agent with Grounded Execution
Dmitriy Rivkin
Francois Hogan
Amal Feriani
Abhisek Konar
Adam Sigal
Steve Liu
Gregory Dudek
2023-11-01
ArXiv (preprint)
doi.org
arxiv.org
Tuning Minimum-Norm regularization parameters for optimal MEG connectivity estimation
Elisabetta Vallarino
Ana-Sofía Hincapié Casas
Karim Jerbi
R. Leahy
Annalisa Pascarella
Alberto Sorrentino
Sara Sommariva
2023-11-01
NeuroImage (published)
doi.org
Criticality of resting-state EEG predicts perturbational complexity and level of consciousness during anesthesia
Charlotte Maschke
Jordan O’Byrne
Michele Angelo Colombo
Melanie Boly
Olivia Gosseries
Steven Laureys
Mario Rosanova
Karim Jerbi
Stefanie Blain-Moraes
Consciousness has been proposed to be supported by electrophysiological patterns poised at criticality, a dynamical regime which exhibits ad… (see more)aptive computational properties, maximally complex patterns and divergent sensitivity to perturbation. Here, we investigated dynamical properties of the resting-state electroencephalogram of healthy subjects undergoing general anesthesia with propofol, xenon or ketamine. We then studied the relation of these dynamic properties with the perturbational complexity index (PCI), which has shown remarkably high sensitivity in detecting consciousness independent of behavior. All participants were unresponsive under anesthesia, while consciousness was retained only during ketamine anesthesia (in the form of vivid dreams)., enabling an experimental dissociation between unresponsiveness and unconsciousness. We estimated (i) avalanche criticality, (ii) chaoticity, and (iii) criticality-related measures, and found that states of unconsciousness were characterized by a distancing from both the edge of activity propagation and the edge of chaos. We were then able to predict individual subjects’ PCI (i.e., PCImax) with a mean absolute error below 7%. Our results establish a firm link between the PCI and criticality and provide further evidence for the role of criticality in the emergence of consciousness. 2 Significance Statement Complexity has long been of interest in consciousness science and had a fundamental impact on many of today’s theories of consciousness. The perturbational complexity index (PCI) uses the complexity of the brain’s response to cortical perturbations to quantify the presence of consciousness. We propose criticality as a unifying framework underlying maximal complexity and sensitivity to perturbation in the conscious brain. We demonstrate that criticality measures derived from resting-state electroencephalography can distinguish conscious from unconscious states, using propofol, xenon and ketamine anesthesia, and from these measures we were able to predict the PCI with a mean error below 7%. Our results support the hypothesis that critical brain dynamics are implicated in the emergence of consciousness and may provide new directions for the assessment of consciousness.
2023-10-31
bioRxiv (preprint)
doi.org
Deep PDE Solvers for Subgrid Modelling and Out-of-Distribution Generalization
Patrick Chatain
Adam M. Oberman
2023-10-31
NeurIPS.cc/2023/Workshop/DLDE (poster)
openreview.net
openreview.net