Mathieu Blanchette

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Membre Académique Associé
Mathieu Blanchette
Professeur adjoint, McGill University
Mathieu Blanchette

Directeur de l’École d’informatique de l’Université McGill.

Après avoir complété son doctorat (U. de Washington, 2002) et son postdoctorat (UC Santa Cruz, 2003), Mathieu s’est joint à l’École d’informatique de McGill et a fondé le Computational Genomics Lab.

Publications

2021-05

Author Correction: RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.
Alessandro Bonetti, Federico Agostini, Ana Maria Suzuki, Kosuke Hashimoto, Giovanni Pascarella, Juliette Gimenez, Leonie Roos, Alex J Nash, Marco Ghilotti, Christopher J F Cameron, Matthew Valentine, Yulia A Medvedeva, Shuhei Noguchi, Eneritz Agirre, Kaori Kashi, Samudyata, Joachim Luginbühl, Riccardo Cazzoli, Saumya Agrawal, Nicholas M Luscombe... (9 more)
Nature Communications
(2021-05-19)
www.nature.com
Neural representation and generation for RNA secondary structures

2021-01

Profiling Chromatin Landscape at High Resolution and Throughput with 2C-ChIP.
Xue Qing David Wang, Christopher J F Cameron, Dana Segal, Denis Paquette, Mathieu Blanchette and Josée Dostie
Methods of Molecular Biology
(2021-01-01)
europepmc.org

2020-12

Supervised learning on phylogenetically distributed data.
Elliot Layne, Erika N Dort, Richard Hamelin, Yue Li and Mathieu Blanchette
Bioinformatics
(2020-12-30)
academic.oup.com
Phylogenetic Manifold Regularization: A semi-supervised approach to predict transcription factor binding sites
Faizy Ahsan, Alexandre Drouin, Francois Laviolette, Doina Precup and Mathieu Blanchette
BIBM 2020
(2020-12-16)
dblp.uni-trier.de
Histone H3.3G34-Mutant Interneuron Progenitors Co-opt PDGFRA for Gliomagenesis
Carol C.L. Chen, Shriya Deshmukh, Selin Jessa, Djihad Hadjadj, Véronique Lisi, Augusto Faria Andrade, Damien Faury, Wajih Jawhar, Rola Dali, Hiromichi Suzuki, Manav Pathania, Deli A, Frank Dubois, Eleanor Woodward, Steven Hébert, Marie Coutelier, Jason Karamchandani, Steffen Albrecht, Sebastian Brandner, Nicolas De Jay... (44 more)
Cell
(2020-12-10)
www.ncbi.nlm.nih.gov

2020-10

SACSANN: identifying sequence-based determinants of chromosomal compartments
Julie A Prost, Christopher Jf Cameron and Mathieu Blanchette
bioRxiv
(2020-10-07)
www.biorxiv.orgPDF

2020-07

EvoLSTM: context-dependent models of sequence evolution using a sequence-to-sequence LSTM.
Dongjoon Lim and Mathieu Blanchette
Bioinformatics
(2020-07-01)
academic.oup.com
Graph neural representational learning of RNA secondary structures for predicting RNA-protein interactions.

2020-06

LAMPS: an analysis pipeline for sequence-specific ligation-mediated amplification reads.
Christopher J. F. Cameron, Xue Q. D. Wang, Josée Dostie and Mathieu Blanchette
BMC Research Notes
(2020-06-03)
bmcresnotes.biomedcentral.comPDF

2020-03

Inter-dependent Centrosomal Co-localization of the cen and ik2 cis-Natural Antisense mRNAs in Drosophila
Julie Bergalet, Dhara Patel, Félix Legendre, Catherine Lapointe, Louis Philip Benoit Bouvrette, Ashley Chin, Mathieu Blanchette, Eunjeong Kwon and Eric Lécuyer
Cell Reports
(2020-03-10)
www.sciencedirect.com

2020-02

RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions
Alessandro Bonetti, Federico Agostini, Ana Maria Suzuki, Kosuke Hashimoto, Giovanni Pascarella, Juliette Gimenez, Leonie Roos, Alex J. Nash, Marco Ghilotti, Christopher J. F. Cameron, Matthew Valentine, Yulia A. Medvedeva, Shuhei Noguchi, Eneritz Agirre, Kaori Kashi, Samudyata, Joachim Luginbühl, Riccardo Cazzoli, Saumya Agrawal, Nicholas M. Luscombe... (9 more)
Nature Communications
(2020-02-24)
europepmc.org[Also on bioRxiv (2019-06-27)]

2020-01

HIFI: estimating DNA-DNA interaction frequency from Hi-C data at restriction-fragment resolution
Christopher Jf Cameron, Josée Dostie and Mathieu Blanchette
Genome Biology
(2020-01-14)
genomebiology.biomedcentral.com
Upstream ORF-Encoded ASDURF Is a Novel Prefoldin-like Subunit of the PAQosome.
Philippe Cloutier, Christian Poitras, Denis Faubert, Annie Bouchard, Mathieu Blanchette, Marie-Soleil Gauthier and Benoit Coulombe
Journal of Proteome Research
(2020-01-03)
pubag.nal.usda.gov
Mycorrhiza: Genotype Assignment using Phylogenetic Networks.
Jeremy Georges-Filteau, Richard C Hamelin and Mathieu Blanchette
Bioinformatics
(2020-01-01)
academic.oup.comPDF

2019-11

oRNAment: a database of putative RNA binding protein target sites in the transcriptomes of model species
Louis Philip Benoit Bouvrette, Samantha Bovaird, Mathieu Blanchette and Eric Lécuyer
Nucleic Acids Research
(2019-11-14)
academic.oup.com

2019-07

Prediction of mRNA subcellular localization using deep recurrent neural networks.
Zichao Yan, Eric Lécuyer and Mathieu Blanchette
Bioinformatics
(2019-07-15)
academic.oup.com
Large-scale mammalian genome rearrangements coincide with chromatin interactions.
Krister M Swenson and Mathieu Blanchette
Bioinformatics
(2019-07-15)
academic.oup.comPDF

2019-04

Rapid Genetic Code Evolution in Green Algal Mitochondrial Genomes
Emmanuel Noutahi, Virginie Calderon, Mathieu Blanchette, Nadia El-Mabrouk and Bernd Franz Lang
Molecular Biology and Evolution
(2019-04-01)
academic.oup.com

2019-02

2C-ChIP: measuring chromatin immunoprecipitation signal from defined genomic regions with deep sequencing
Xue Qing David Wang, Christopher J. F. Cameron, Denis Paquette, Dana Segal, Reid Warsaba, Mathieu Blanchette and Josée Dostie
BMC Genomics
(2019-02-28)
bmcgenomics.biomedcentral.comPDF

2019-01

Bioinformatics Approaches to Gain Insights into cis-Regulatory Motifs Involved in mRNA Localization.
Louis Philip Benoit Bouvrette, Mathieu Blanchette and Eric Lécuyer
Advances in Experimental Medicine and Biology
(2019-01-01)
europepmc.org

2018-12

Double-Stranded Biotinylated Donor Enhances Homology-Directed Repair in Combination with Cas9 Monoavidin in Mammalian Cells.
Philip J.R. Roche, Heidi Gytz, Faiz Hussain, Christopher J.F. Cameron, Denis Paquette, Mathieu Blanchette, Josée Dostie, Bhushan Nagar and Uri David Akavia
The CRISPR journal
(2018-12-20)
www.liebertpub.com

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