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Publications
MiRGraph: A hybrid deep learning approach to identify microRNA-target interactions by integrating heterogeneous regulatory network and genomic sequences
Insects represent half of all global biodiversity, yet many of the world's insects are disappearing, with severe implications for ecosystems… (voir plus) and agriculture. Despite this crisis, data on insect diversity and abundance remain woefully inadequate, due to the scarcity of human experts and the lack of scalable tools for monitoring. Ecologists have started to adopt camera traps to record and study insects, and have proposed computer vision algorithms as an answer for scalable data processing. However, insect monitoring in the wild poses unique challenges that have not yet been addressed within computer vision, including the combination of long-tailed data, extremely similar classes, and significant distribution shifts. We provide the first large-scale machine learning benchmarks for fine-grained insect recognition, designed to match real-world tasks faced by ecologists. Our contributions include a curated dataset of images from citizen science platforms and museums, and an expert-annotated dataset drawn from automated camera traps across multiple continents, designed to test out-of-distribution generalization under field conditions. We train and evaluate a variety of baseline algorithms and introduce a combination of data augmentation techniques that enhance generalization across geographies and hardware setups.
Causal discovery aims to automatically uncover causal relationships from data, a capability with significant potential across many scientifi… (voir plus)c disciplines. However, its real-world applications remain limited. Current methods often rely on unrealistic assumptions and are evaluated only on simple synthetic toy datasets, often with inadequate evaluation metrics. In this paper, we substantiate these claims by performing a systematic review of the recent causal discovery literature. We present applications in biology, neuroscience, and Earth sciences - fields where causal discovery holds promise for addressing key challenges. We highlight available simulated and real-world datasets from these domains and discuss common assumption violations that have spurred the development of new methods. Our goal is to encourage the community to adopt better evaluation practices by utilizing realistic datasets and more adequate metrics.
Causal discovery aims to automatically uncover causal relationships from data, a capability with significant potential across many scientifi… (voir plus)c disciplines. However, its real-world applications remain limited. Current methods often rely on unrealistic assumptions and are evaluated only on simple synthetic toy datasets, often with inadequate evaluation metrics. In this paper, we substantiate these claims by performing a systematic review of the recent causal discovery literature. We present applications in biology, neuroscience, and Earth sciences - fields where causal discovery holds promise for addressing key challenges. We highlight available simulated and real-world datasets from these domains and discuss common assumption violations that have spurred the development of new methods. Our goal is to encourage the community to adopt better evaluation practices by utilizing realistic datasets and more adequate metrics.
The multicommodity capacitated fixed-charge network design problem has been extensively studied in the literature due to its wide range of a… (voir plus)pplications. Despite the fact that many sophisticated solution methods exist today, finding high-quality solutions to large-scale instances remains challenging. In this paper, we explore how a data-driven approach can help improve upon the state of the art. By leveraging machine learning models, we attempt to reveal patterns hidden in the data that might be difficult to capture with traditional optimization methods. For scalability, we propose a prediction method where the machine learning model is called at the level of each arc of the graph. We take advantage of off-the-shelf models trained via supervised learning to predict near-optimal solutions. Our experimental results include an algorithm design analysis that compares various integration strategies of predictions within local search algorithms. We benchmark the ML-based approach with respect to the state-of-the-art heuristic for this problem. The findings indicate that our method can outperform the leading heuristic on sets of instances sampled from a uniform distribution.
2024-12-01
Transportation Research Part E: Logistics and Transportation Review (publié)
Ensemble machine learning to accelerate industrial decarbonization: Prediction of Hansen solubility parameters for streamlined chemical solvent selection
Ensemble machine learning to accelerate industrial decarbonization: Prediction of Hansen solubility parameters for streamlined chemical solvent selection
