Yue Li

Membre Académique Associé
Yue Li
Professeur adjoint, McGill University
Yue Li

Yue Li est professeur agrégé à l’École d’informatique de l’Université McGill. Ses recherches se concentrent sur le développement d’approches d’apprentissage automatique dans les domaines des soins de santé et de la génomique fonctionnelle. Il élabore notamment des modèles d’apprentissage probabiliste et génératif profond pour favoriser la mise en place de registres électroniques de santé génétique et épigénétique, ainsi que des données d’imagerie médicale de populations hétérogènes.

Publications

2021-10

SparsePro: an efficient genome-wide fine-mapping method integrating summary statistics and functional annotations
Wenmin Zhang, Hamed Najafabadi and Yue Li
bioRxiv
(2021-10-06)
www.biorxiv.orgPDF
Congenital heart disease phenotyping in large claims databases
Chao Li, Aihua Liu, Liming Guo, Yi Yang, Yue Li and Ariane Marelli
International Journal of Cardiology Congenital Heart Disease
(2021-10-01)
api.elsevier.com
Publisher Correction: Learning interpretable cellular and gene signature embeddings from single-cell transcriptomic data
Yifan Zhao, Huiyu Cai, Zuobai Zhang, Jian Tang and Yue Li
Nature Communications
(2021-10-01)
www-nature-com-443.webvpn.bjmu.tsg211.com

2021-09

Transplantation of bacteriophages from ulcerative colitis patients shifts the gut bacteriome and exacerbates severity of DSS-colitis
A. Sinha, Y. Li, M. Khan Mirzaei, M. Shamash, R. Samadfam, I. L. King and C. F. Maurice
bioRxiv
(2021-09-11)
www.biorxiv.orgPDF
Learning interpretable cellular and gene signature embeddings from single-cell transcriptomic data.
Yifan Zhao, Huiyu Cai, Zuobai Zhang, Jian Tang and Yue Li

2021-08

Supervised multi-specialist topic model with applications on large-scale electronic health record data
Ziyang Song, Xavier Sumba Toral, Yixin Xu, Aihua Liu, Liming Guo, Guido Powell, Aman Verma, David Buckeridge, Ariane Marelli and Yue Li

2021-07

Deep learning identifies and quantifies recombination hotspot determinants
Y. Li, S. Chen, T. Rapakoulia, H. Kuwahara, K. Yip and X. Gao
bioRxiv
(2021-07-29)
biorxiv.orgPDF

2021-06

Assumptions about frequency-dependent architectures of complex traits bias measures of functional enrichment
Shadi Zabad, Aaron P. Ragsdale, Rosie Sun, Yue Li and Simon Gravel
Genetic Epidemiology
(2021-06-22)
europepmc.org[Also on bioRxiv (2020-10-25)]
Deep feature extraction of single-cell transcriptomes by generative adversarial network.
Mojtaba Bahrami, Malosree Maitra, Corina Nagy, Gustavo Turecki, Hamid R Rabiee and Yue Li

2021-05

Inferring global-scale temporal latent topics from news reports to predict public health interventions for COVID-19
Zhi Wen, Guido Powell, Imane Chafi, David L Buckeridge and Yue Li
medRxiv
(2021-05-24)
europepmc.orgPDF
Publisher Correction: The default network of the human brain is associated with perceived social isolation
R. Nathan Spreng, Emile Dimas, Laetitia Mwilambwe-Tshilobo, Alain Dagher, Philipp Koellinger, Gideon Nave, Anthony Ong, Julius M. Kernbach, Thomas V. Wiecki, Tian Ge, Yue Li, Avram J. Holmes, B. T. Thomas Yeo, Gary R. Turner, Robin I. M. Dunbar and Danilo Bzdok
Nature Communications
(2021-05-21)
www-nature-com-443.webvpn.bjmu.tsg211.com
Lifespan Perspective on Congenital Heart Disease Research: JACC State-of-the-Art Review.
Gerhard-Paul Diller, Alexandra Arvanitaki, Alexander R. Opotowsky, Kathy Jenkins, Philip Moons, Alexander Kempny, Animesh Tandon, Andrew Redington, Paul Khairy, Seema Mital, Michael Α. Gatzoulis, Yue Li and Ariane Marelli
Journal of the American College of Cardiology
(2021-05-04)
europepmc.org

2021-04

Mining heterogeneous clinical notes by multi-modal latent topic model.
Zhi Wen, Pratheeksha Nair, Chih-Ying Deng, Xing Han Lu, Edward Moseley, Naomi George, Charlotta Lindvall and Yue Li
PLOS ONE
(2021-04-08)
europepmc.org

2021-01

Recurrent disease progression networks for modelling risk trajectory of heart failure.
Xing Han Lu, Aihua Liu, Shih-Chieh Fuh, Yi Lian, Liming Guo, Yi Yang, Ariane Marelli and Yue Li
PLOS ONE
(2021-01-06)
ui.adsabs.harvard.edu

2020-12

Supervised learning on phylogenetically distributed data.
Elliot Layne, Erika N Dort, Richard Hamelin, Yue Li and Mathieu Blanchette
Bioinformatics
(2020-12-30)
academic.oup.com
The default network of the human brain is associated with perceived social isolation
R. Nathan Spreng, Emile Dimas, Laetitia Mwilambwe-Tshilobo, Alain Dagher, Philipp Koellinger, Gideon Nave, Anthony Ong, Julius M. Kernbach, Thomas V. Wiecki, Tian Ge, Yue Li, Avram J. Holmes, B. T. Thomas Yeo, Gary R. Turner, Robin I. M. Dunbar and Danilo Bzdok
Nature Communications
(2020-12-15)
www.nature.com

2020-11

NERO: A Biomedical Named-entity (Recognition) Ontology with a Large, Annotated Corpus Reveals Meaningful Associations Through Text Embedding
Wang K, Stevens R, Alachram H, Li Y, Soldatova L, King R, Ananiadou S, Li M, Christopoulou F, Ambite Jl, Garg S, Hermjakob U, Marcu D, Sheng E, Beißbarth T, Wingender E, Galstyan A, Gao X, Chambers B, Khomtchouk Bb... (2 more)
bioRxiv
(2020-11-06)
europepmc.org

2020-10

Video Key Object Detection Network via Reinforcement Learning
Yue Li, Xiangchun Zhou, Tao Cui, Ruohan Gong, Zuqi Tang, Chuang Wang and Wei Wang
ISCAS 2020
(2020-10-01)
xplorestaging.ieee.org
Numeric Data Augmentation using Structural Constraint Wasserstein Generative Adversarial Networks
Wei Wang, Chuang Wang, Tao Cui, Ruohan Gong, Zuqi Tang, Xiangchun Zhou and Yue Li
ISCAS 2020
(2020-10-01)
xplorestaging.ieee.org

2020-09

Global Surveillance of COVID-19 by mining news media using a multi-source dynamic embedded topic model
Yue Li, Pratheeksha Nair, Zhi Wen, Imane Chafi, Anya Okhmatovskaia, Guido Powell, Yannan Shen and David Buckeridge
BIOINFORMATICS 2020
(2020-09-21)
dl.acm.org

2020-08

Partitioning gene-based variance of complex traits by gene score regression
Wenmin Zhang, Si Yi Li, Tianyi Liu and Yue Li
PLOS ONE
(2020-08-20)
journals.plos.org

2020-05

Inferring multimodal latent topics from electronic health records
Yue Li, Pratheeksha Nair, Xing Han Lu, Zhi Wen, Yuening Wang, Amir Ardalan Kalantari Dehaghi, Yan Miao, Weiqi Liu, Tamas Ordog, Joanna M. Biernacka, Euijung Ryu, Janet E. Olson, Mark A. Frye, Aihua Liu, Liming Guo, Ariane Marelli, Yuri Ahuja, Jose Davila-Velderrain and Manolis Kellis
Nature Communications
(2020-05-21)
europepmc.org
Study of Restrained Network Structures for Wasserstein Generative Adversarial Networks (WGANs) on Numeric Data Augmentation
Wei Wang, Chuang Wang, Tao Cui and Yue Li
IEEE Access
(2020-05-11)
doi.org

2020-02

Catalytic hydrolysis of microcystin-LR peptides on the surface of naturally occurring minerals
Yanfen Fang, Xinqiang Cao, Wei Zhou, Yue Li, David M. Johnson and Yingping Huang
Research on Chemical Intermediates
(2020-02-01)
link.springer.com

2020-01

A white-light-emitting single MOF sensor-based array for berberine homologue discrimination
Qian Wang, Qiao Liu, Xiao-Meng Du, Bo Zhao, Yue Li and Wen-Juan Ruan
Journal of Materials Chemistry C
(2020-01-30)
pubs.rsc.org
A luminescent MOF as a fluorescent sensor for the sequential detection of Al3+ and phenylpyruvic acid
Qian Wang, Xiao-Meng Du, Bo Zhao, Meili Pang, Yue Li and Wen-Juan Ruan
New Journal of Chemistry
(2020-01-27)
pubs.rsc.org
Ultrasensitive Assay of Alkaline Phosphatase Based on the Fluorescent Response Difference of the Metal-Organic Framework Sensor.
Xi-Yuan Yao, Qian Wang, Qiao Liu, Meili Pang, Xiao-Meng Du, Bo Zhao, Yue Li and Wen-Juan Ruan
ACS omega
(2020-01-14)
pubs.acs.orgPDF
Partitioning gene-based variance of complex traits by gene score regression
Yue Li, Si Yi Li, Wenmin Zhang and Tianyi Amanda Liu
bioRxiv
(2020-01-09)
www.biorxiv.orgPDF

2019-11

Study of Constrained Network Structures for WGANs on Numeric Data Generation.
Wei Wang, Chuang Wang, Tao Cui and Yue Li
arXiv preprint arXiv:1911.01649
(2019-11-05)
dblp.uni-trier.dePDF

2019-10

Metal-organic frameworks based fluorescent sensor array for discrimination of flavonoids.
Qiao Liu, Jie Gao, Zhe Zheng, Di Ning, Qian Wang, Xiao-Meng Du, Bo Zhao, Wen-Juan Ruan and Yue Li
Talanta
(2019-10-01)
www.sciencedirect.com

2019-09

Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci.
Jonathan M. Mudge, Irwin Jungreis, Toby Hunt, Jose Manuel Gonzalez, James C. Wright, Mike Kay, Claire Davidson, Stephen Fitzgerald, Ruth Seal, Susan Tweedie, Liang He, Robert M. Waterhouse, Yue Li, Elspeth Bruford, Jyoti S. Choudhary, Adam Frankish and Manolis Kellis
Genome Research
(2019-09-19)
europepmc.orgPDF

Publications collected and formatted using Paperoni

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