Publications

From the Lab to the Theater: An Unconventional Field Robotics Journey

Ali Imran

Vivek Shankar Vardharajan

Rafael Gomes Braga

Yann Bouteiller

Abdalwhab Abdalwhab

Matthis Di-Giacomo

Alexandra Mercader

Giovanni Beltrame

David St-Onge

2024-04-11

ArXiv (prépublication)

Scalable Hierarchical Self-Attention with Learnable Hierarchy for Long-Range Interactions

Thuan Nguyen Anh Trang

Khang Nhat Ngo

Hugo Sonnery

Thieu Vo

Siamak Ravanbakhsh

Truong Son Hy

Self-attention models have made great strides toward accurately modeling a wide array of data modalities, including, more recently, graph-st… (voir plus)ructured data. This paper demonstrates that adaptive hierarchical attention can go a long way toward successfully applying transformers to graphs. Our proposed model Sequoia provides a powerful inductive bias towards long-range interaction modeling, leading to better generalization. We propose an end-to-end mechanism for a data-dependent construction of a hierarchy which in turn guides the self-attention mechanism. Using adaptive hierarchy provides a natural pathway toward sparse attention by constraining node-to-node interactions with the immediate family of each node in the hierarchy (e.g., parent, children, and siblings). This in turn dramatically reduces the computational complexity of a self-attention layer from quadratic to log-linear in terms of the input size while maintaining or sometimes even surpassing the standard transformer's ability to model long-range dependencies across the entire input. Experimentally, we report state-of-the-art performance on long-range graph benchmarks while remaining computationally efficient. Moving beyond graphs, we also display competitive performance on long-range sequence modeling, point-clouds classification, and segmentation when using a fixed hierarchy. Our source code is publicly available at https://github.com/HySonLab/HierAttention

2024-04-11

TMLR (accepté)

openreview.net

Temporal trends in disparities in COVID-19 seropositivity among Canadian blood donors

Yuan Yu

Matthew J Knight

Diana Gibson

Sheila F O’Brien

David Buckeridge

W Alton Russell

Abstract Background In Canada’s largest COVID-19 serological study, SARS-CoV-2 antibodies in blood donors have been monitored since 2020. … (voir plus)No study has analysed changes in the association between anti-N seropositivity (a marker of recent infection) and geographic and sociodemographic characteristics over the pandemic. Methods Using Bayesian multi-level models with spatial effects at the census division level, we analysed changes in correlates of SARS-CoV-2 anti-N seropositivity across three periods in which different variants predominated (pre-Delta, Delta and Omicron). We analysed disparities by geographic area, individual traits (age, sex, race) and neighbourhood factors (urbanicity, material deprivation and social deprivation). Data were from 420 319 blood donations across four regions (Ontario, British Columbia [BC], the Prairies and the Atlantic region) from December 2020 to November 2022. Results Seropositivity was higher for racialized minorities, males and individuals in more materially deprived neighbourhoods in the pre-Delta and Delta waves. These subgroup differences dissipated in the Omicron wave as large swaths of the population became infected. Across all waves, seropositivity was higher in younger individuals and those with lower neighbourhood social deprivation. Rural residents had high seropositivity in the Prairies, but not other regions. Compared to generalized linear models, multi-level models with spatial effects had better fit and lower error when predicting SARS-CoV-2 anti-N seropositivity by geographic region. Conclusions Correlates of recent COVID-19 infection have evolved over the pandemic. Many disparities lessened during the Omicron wave, but public health intervention may be warranted to address persistently higher burden among young people and those with less social deprivation.

2024-04-11

International Journal of Epidemiology (publié)

Association between arterial oxygen and mortality across critically ill patients with hematologic malignancies: results from an international collaborative network

Guillaume Dumas

Idunn S. Morris

Tamishta Hensman

Sean M. Bagshaw

Alexandre Demoule

Bruno Ferreyro

Achille Kouatchet

Virginie Lemiale

Djamel Mokart

Frédéric Pène

Sangeeta Mehta

Elie Azoulay

Laveena Munshi

Laurent Argaud

François Barbier

Dominique Benoit

Naike Bigé

Fabrice Bruneel

Emmanuel Canet

Yves Cohen … (voir 30 de plus)

Michaël Darmon

Didier Gruson

Kada Klouche

Loay Kontar

Alexandre Lautrette

Christine Lebert

Guillaume Louis

Julien Mayaux

Anne-Pascale Meert

Anne-Sophie Moreau

Martine Nyunga

Vincent Peigne

Pierre Perez

Jean Herlé Raphalen

Carole Schwebel

Jean-Marie Tonnelier

Florent Wallet

Lara Zafrani

Bram Rochwerg

Farah Shoukat

Dean Fergusson

Paul Heffernan

Margaret Herridge

Sheldon Magder

Mark Minden

Rakesh Patel

Salman Qureshi

Aaron Schimmer

Santhosh Thyagu

Han Ting Wang

2024-04-10

Intensive Care Medicine (publié)

Deep Generative Sampling in the Dual Divergence Space: A Data-efficient&Interpretative Approach for Generative AI

Sahil Garg

Anderson Schneider

Anant Raj

Kashif Rasul

Yuriy Nevmyvaka

S. Gopal

Amit Dhurandhar

Guillermo A. Cecchi

Irina Rish

Building on the remarkable achievements in generative sampling of natural images, we propose an innovative challenge, potentially overly amb… (voir plus)itious, which involves generating samples of entire multivariate time series that resemble images. However, the statistical challenge lies in the small sample size, sometimes consisting of a few hundred subjects. This issue is especially problematic for deep generative models that follow the conventional approach of generating samples from a canonical distribution and then decoding or denoising them to match the true data distribution. In contrast, our method is grounded in information theory and aims to implicitly characterize the distribution of images, particularly the (global and local) dependency structure between pixels. We achieve this by empirically estimating its KL-divergence in the dual form with respect to the respective marginal distribution. This enables us to perform generative sampling directly in the optimized 1-D dual divergence space. Specifically, in the dual space, training samples representing the data distribution are embedded in the form of various clusters between two end points. In theory, any sample embedded between those two end points is in-distribution w.r.t. the data distribution. Our key idea for generating novel samples of images is to interpolate between the clusters via a walk as per gradients of the dual function w.r.t. the data dimensions. In addition to the data efficiency gained from direct sampling, we propose an algorithm that offers a significant reduction in sample complexity for estimating the divergence of the data distribution with respect to the marginal distribution. We provide strong theoretical guarantees along with an extensive empirical evaluation using many real-world datasets from diverse domains, establishing the superiority of our approach w.r.t. state-of-the-art deep learning methods.

2024-04-10

ArXiv (prépublication)

AI healthcare research: Pioneering iSMART Lab

Narges Armanfard

Dr Narges Armanfard, Professor, talks us through the AI healthcare research at McGill University which is spearheading a groundbreaking init… (voir plus)iative – the iSMART Lab. Access to high-quality healthcare is not just a fundamental human right; it is the bedrock of our societal wellbeing, with the crucial roles played by doctors, nurses, and hospitals. Yet, healthcare systems globally face mounting challenges, particularly from aging populations. Dr Narges Armanfard, affiliated with McGill University and Mila Quebec AI Institute in Montreal, Canada, has spearheaded a groundbreaking initiative – the iSMART Lab. This laboratory represents a revolutionary leap into the future of healthcare, with its pioneering research in AI for health applications garnering significant attention. Renowned for its innovative integration of AI across diverse domains, iSMART Lab stands at the forefront of harnessing Artificial Intelligence to elevate and streamline health services.

2024-04-09

Open Access Government (publié)

Interpretable Machine Learning for Finding Intermediate-mass Black Holes

Mario Pasquato

Piero Trevisan

Abbas Askar

Pablo Lemos

Gaia Carenini

Michela Mapelli

Yashar Hezaveh

2024-04-09

The Astrophysical Journal (publié)

LLM2Vec: Large Language Models Are Secretly Powerful Text Encoders

Parishad BehnamGhader

Vaibhav Adlakha

Marius Mosbach

Large decoder-only language models (LLMs) are the state-of-the-art models on most of today's NLP tasks and benchmarks. Yet, the community is… (voir plus) only slowly adopting these models for text embedding tasks, which require rich contextualized representations. In this work, we introduce LLM2Vec, a simple unsupervised approach that can transform any decoder-only LLM into a strong text encoder. LLM2Vec consists of three simple steps: 1) enabling bidirectional attention, 2) masked next token prediction, and 3) unsupervised contrastive learning. We demonstrate the effectiveness of LLM2Vec by applying it to 4 popular LLMs ranging from 1.3B to 8B parameters and evaluate the transformed models on English word- and sequence-level tasks. We outperform encoder-only models by a large margin on word-level tasks and reach a new unsupervised state-of-the-art performance on the Massive Text Embeddings Benchmark (MTEB). Moreover, when combining LLM2Vec with supervised contrastive learning, we achieve state-of-the-art performance on MTEB among models that train only on publicly available data (as of May 24, 2024). Our strong empirical results and extensive analysis demonstrate that LLMs can be effectively transformed into universal text encoders in a parameter-efficient manner without the need for expensive adaptation or synthetic GPT-4 generated data.

2024-04-09

ArXiv (prépublication)

LLM2Vec: Large Language Models Are Secretly Powerful Text Encoders

Parishad BehnamGhader

Vaibhav Adlakha

Marius Mosbach

Large decoder-only language models (LLMs) are the state-of-the-art models on most of today's NLP tasks and benchmarks. Yet, the community is… (voir plus) only slowly adopting these models for text embedding tasks, which require rich contextualized representations. In this work, we introduce LLM2Vec, a simple unsupervised approach that can transform any decoder-only LLM into a strong text encoder. LLM2Vec consists of three simple steps: 1) enabling bidirectional attention, 2) masked next token prediction, and 3) unsupervised contrastive learning. We demonstrate the effectiveness of LLM2Vec by applying it to 4 popular LLMs ranging from 1.3B to 8B parameters and evaluate the transformed models on English word- and sequence-level tasks. We outperform encoder-only models by a large margin on word-level tasks and reach a new unsupervised state-of-the-art performance on the Massive Text Embeddings Benchmark (MTEB). Moreover, when combining LLM2Vec with supervised contrastive learning, we achieve state-of-the-art performance on MTEB among models that train only on publicly available data (as of May 24, 2024). Our strong empirical results and extensive analysis demonstrate that LLMs can be effectively transformed into universal text encoders in a parameter-efficient manner without the need for expensive adaptation or synthetic GPT-4 generated data.

2024-04-09

ArXiv (prépublication)

LLM2Vec: Large Language Models Are Secretly Powerful Text Encoders

Parishad BehnamGhader

Vaibhav Adlakha

Marius Mosbach

Large decoder-only language models (LLMs) are the state-of-the-art models on most of today's NLP tasks and benchmarks. Yet, the community is… (voir plus) only slowly adopting these models for text embedding tasks, which require rich contextualized representations. In this work, we introduce LLM2Vec, a simple unsupervised approach that can transform any decoder-only LLM into a strong text encoder. LLM2Vec consists of three simple steps: 1) enabling bidirectional attention, 2) masked next token prediction, and 3) unsupervised contrastive learning. We demonstrate the effectiveness of LLM2Vec by applying it to 3 popular LLMs ranging from 1.3B to 7B parameters and evaluate the transformed models on English word- and sequence-level tasks. We outperform encoder-only models by a large margin on word-level tasks and reach a new unsupervised state-of-the-art performance on the Massive Text Embeddings Benchmark (MTEB). Moreover, when combining LLM2Vec with supervised contrastive learning, we achieve state-of-the-art performance on MTEB among models that train only on publicly available data. Our strong empirical results and extensive analysis demonstrate that LLMs can be effectively transformed into universal text encoders in a parameter-efficient manner without the need for expensive adaptation or synthetic GPT-4 generated data.

2024-04-09

ArXiv (prépublication)

LLM2Vec: Large Language Models Are Secretly Powerful Text Encoders

Parishad BehnamGhader

Vaibhav Adlakha

Marius Mosbach

Large decoder-only language models (LLMs) are the state-of-the-art models on most of today's NLP tasks and benchmarks. Yet, the community is… (voir plus) only slowly adopting these models for text embedding tasks, which require rich contextualized representations. In this work, we introduce LLM2Vec, a simple unsupervised approach that can transform any decoder-only LLM into a strong text encoder. LLM2Vec consists of three simple steps: 1) enabling bidirectional attention, 2) masked next token prediction, and 3) unsupervised contrastive learning. We demonstrate the effectiveness of LLM2Vec by applying it to 4 popular LLMs ranging from 1.3B to 8B parameters and evaluate the transformed models on English word- and sequence-level tasks. We outperform encoder-only models by a large margin on word-level tasks and reach a new unsupervised state-of-the-art performance on the Massive Text Embeddings Benchmark (MTEB). Moreover, when combining LLM2Vec with supervised contrastive learning, we achieve state-of-the-art performance on MTEB among models that train only on publicly available data (as of May 24, 2024). Our strong empirical results and extensive analysis demonstrate that LLMs can be effectively transformed into universal text encoders in a parameter-efficient manner without the need for expensive adaptation or synthetic GPT-4 generated data.

2024-04-09

ArXiv (prépublication)