We use cookies to analyze the browsing and usage of our website and to personalize your experience. You can disable these technologies at any time, but this may limit certain functionalities of the site. Read our Privacy Policy for more information.
Setting cookies
You can enable and disable the types of cookies you wish to accept. However certain choices you make could affect the services offered on our sites (e.g. suggestions, personalised ads, etc.).
Essential cookies
These cookies are necessary for the operation of the site and cannot be deactivated. (Still active)
Analytics cookies
Do you accept the use of cookies to measure the audience of our sites?
Multimedia Player
Do you accept the use of cookies to display and allow you to watch the video content hosted by our partners (YouTube, etc.)?
Publications
Building spatial world models from sparse transitional episodic memories
Many animals possess a remarkable capacity to rapidly construct flexible mental models of their environments. These world models are crucial… (see more) for ethologically relevant behaviors such as navigation, exploration, and planning. The ability to form episodic memories and make inferences based on these sparse experiences is believed to underpin the efficiency and adaptability of these models in the brain. Here, we ask: Can a neural network learn to construct a spatial model of its surroundings from sparse and disjoint episodic memories? We formulate the problem in a simulated world and propose a novel framework, the Episodic Spatial World Model (ESWM), as a potential answer. We show that ESWM is highly sample-efficient, requiring minimal observations to construct a robust representation of the environment. It is also inherently adaptive, allowing for rapid updates when the environment changes. In addition, we demonstrate that ESWM readily enables near-optimal strategies for exploring novel environments and navigating between arbitrary points, all without the need for additional training.
Topologically associating domains (TADs) are fundamental units of 3D genomes and play essential roles in gene regulation. Hi-C data suggests… (see more) a hierarchical organization of TADs. Accurately annotating nested TADs from Hi-C data remains challenging, both in terms of the precise identification of boundaries and the correct inference of hierarchies. While domain boundary is relatively well conserved across cells, few approaches have taken advantage of this fact. Here, we present RobusTAD to annotate TAD hierarchies. It incorporates additional Hi-C data to refine boundaries annotated from the study sample. RobusTAD outperforms existing tools at boundary and domain annotation across several benchmarking tasks. Supplementary Information The online version contains supplementary material available at 10.1186/s13059-025-03568-9.