Publications

Enzo Ferrante

Xavier Pennec

Adrian Dalca

Sarah Parisot

S. Joshi

Nematollah Batmanghelich

Aristeidis Sotiras

Mads Lenstrup Nielsen

Mert R. Sabuncu

Tom Fletcher

Li Shen

Stanley Durrleman

Stefan H. Sommer

2017-01-01

GRAIL/MFCA/MICGen@MICCAI (published)

Hierarchical Methods of Moments

Matteo Ruffini

Guillaume Rabusseau

Borja Balle

Spectral methods of moments provide a powerful tool for learning the parameters of latent variable models. Despite their theoretical appeal,… (see more) the applicability of these methods to real data is still limited due to a lack of robustness to model misspecification. In this paper we present a hierarchical approach to methods of moments to circumvent such limitations. Our method is based on replacing the tensor decomposition step used in previous algorithms with approximate joint diagonalization. Experiments on topic modeling show that our method outperforms previous tensor decomposition methods in terms of speed and model quality.

Intravascular Imaging and Computer Assisted Stenting and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis

M. Jorge Cardoso

Su-Lin Lee

Veronika Cheplygina

Simone Balocco

Diana Mateus

Guillaume Zahnd

Lena Maier-Hein

Stefanie Demirci

Éric Granger

Luc Duong

M. Carbonneau

Shadi N. Albarqouni

G. Carneiro

2017-01-01

CVII-STENT/LABELS@MICCAI (published)

Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment

M. Jorge Cardoso

Fei Gao

BERNHARD KAINZ

T. Walsum

Kuangyu Shi

Kanwal K. Bhatia

R. Peter

Tom Kamiel Magda Vercauteren

Mauricio Reyes

Adrian Dalca

Roland Wiest

Wiro Niessen

B. Emmer

2017-01-01

CMMI/RAMBO/SWITCH@MICCAI (published)

Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment

M. Cardoso

Fei Gao

BERNHARD KAINZ

T. Walsum

Kuangyu Shi

Kanwal K. Bhatia

R. Peter

Tom Kamiel Magda Vercauteren

Mauricio Reyes

Adrian Dalca

Roland Wiest

W. Niessen

B. Emmer

2017-01-01

Lecture Notes in Computer Science (published)

Multitask Spectral Learning of Weighted Automata

Guillaume Rabusseau

Borja Balle

Joelle Pineau

We consider the problem of estimating multiple related functions computed by weighted automata~(WFA). We first present a natural notion of r… (see more)elatedness between WFAs by considering to which extent several WFAs can share a common underlying representation. We then introduce the model of vector-valued WFA which conveniently helps us formalize this notion of relatedness. Finally, we propose a spectral learning algorithm for vector-valued WFAs to tackle the multitask learning problem. By jointly learning multiple tasks in the form of a vector-valued WFA, our algorithm enforces the discovery of a representation space shared between tasks. The benefits of the proposed multitask approach are theoretically motivated and showcased through experiments on both synthetic and real world datasets.

PROCLIVITY PATTERNS IN ATTRIBUTED GRAPHS

Reihaneh Rabbany

Dhivya Eswaran

Christos Faloutsos

Artur Dubrawski

Many real world applications include information on both attributes of individual entities as well as relations between them, while there ex… (see more)ists an interplay between these attributes and relations. For example, in a typical social network, the similarity of individuals’ characteristics motivates them to form relations, a.k.a. social selection; whereas the characteristics of individuals may be affected by the characteristics of their relations, a.k.a. social influence. We can measure proclivity in networks by quantifying the correlation of nodal attributes and the structure [1]. Here, we are interested in a more fundamental study, to extend the basic statistics defined for graphs and draw parallels for the attributed graphs. More formally, an attributed graph is denoted by (A,X); where An×n is the adjacency matrix and encodes the relationships between the n nodes, and Xn×k is the attributes matrix –each row shows the feature vector of the corresponding node. Degree of a node encodes the number of its neighbors, computed as ki = ∑ j Aij . We can extend this notion to networks with binary attributes to the number of neighbors which share a particular attribute x, i.e. ki(x) = ∑ j Aijδ(Xj , x); where δ(Xj , x) = 1 iff node j has attribute x. Similar to the simple graphs, where the degree distribution is studied and showed to be heavy tail, here we can look at: 1) the degree distributions per attribute, 2) the joint probability distribution of any pair of attributes. Moreover, if we assume A(x1, x2) is the induced subgraph (or masked matrix of edges) with endpoints of values (x1, x2), i.e., A(x1, x2) = Aijδ(Xi, x1)δ(Xj , x2), then we can study and compare these distributions for the induced subgraph per each pair of attribute values. For example, Figure 1 shows the same general trend in the distribution of the original graph and the three possible induced subgraph.

2017-01-01

(published)

www.semanticscholar.org

Diet Networks: Thin Parameters for Fat Genomic

Adriana Romero Soriano

pierre luc carrier

Akram Erraqabi

Tristan Sylvain

Alex Auvolat

Etienne Dejoie

Marc-andr'e Legault

M. Dubé

Julie Hussin

Learning tasks such as those involving genomic data often poses a serious challenge: the number of input features can be orders of magnitude… (see more) larger than the number of training examples, making it difficult to avoid overfitting, even when using the known regularization techniques. We focus here on tasks in which the input is a description of the genetic variation specific to a patient, the single nucleotide polymorphisms (SNPs), yielding millions of ternary inputs. Improving the ability of deep learning to handle such datasets could have an important impact in precision medicine, where high-dimensional data regarding a particular patient is used to make predictions of interest. Even though the amount of data for such tasks is increasing, this mismatch between the number of examples and the number of inputs remains a concern. Naive implementations of classifier neural networks involve a huge number of free parameters in their first layer: each input feature is associated with as many parameters as there are hidden units. We propose a novel neural network parametrization which considerably reduces the number of free parameters. It is based on the idea that we can first learn or provide a distributed representation for each input feature (e.g. for each position in the genome where variations are observed), and then learn (with another neural network called the parameter prediction network) how to map a feature's distributed representation to the vector of parameters specific to that feature in the classifier neural network (the weights which link the value of the feature to each of the hidden units). We show experimentally on a population stratification task of interest to medical studies that the proposed approach can significantly reduce both the number of parameters and the error rate of the classifier.

2016-11-04

ArXiv (preprint)

HeMIS: Hetero-Modal Image Segmentation

Mohammad Havaei

Nicolas Guizard

Nicolas Chapados

2016-10-02

Medical Image Computing and Computer-Assisted Intervention – MICCAI 2016 (published)

A Multisensor Multi-Bernoulli Filter

Augustin-Alexandru Saucan

Mark Coates

Michael Rabbat

In this paper, we derive a multisensor multi-Bernoulli (MS-MeMBer) filter for multitarget tracking. Measurements from multiple sensors are e… (see more)mployed by the proposed filter to update a set of tracks modeled as a multi-Bernoulli random finite set. An exact implementation of the MS-MeMBer update procedure is computationally intractable. We propose an efficient approximate implementation by using a greedy measurement partitioning mechanism. The proposed filter allows for Gaussian mixture or particle filter implementations. Numerical simulations conducted for both linear-Gaussian and nonlinear models highlight the improved accuracy of the MS-MeMBer filter and its reduced computational load with respect to the multisensor cardinalized probability hypothesis density filter and the iterated-corrector cardinality-balanced multi-Bernoulli filter especially for low probabilities of detection.

2016-09-16

ArXiv (preprint)

HeMIS: Hetero-Modal Image Segmentation

Mohammad Havaei

Nicolas Guizard

Nicolas Chapados

2016-07-18

ArXiv (preprint)

Theano: A Python framework for fast computation of mathematical expressions

Rami Al-rfou'

Guillaume Alain

Amjad Almahairi

Christof Angermüller

Dzmitry Bahdanau

Nicolas Ballas

Frédéric Bastien

Justin S. Bayer

A. Belikov

A. Belopolsky

Arnaud Bergeron

J. Bergstra

Valentin Bisson

Josh Bleecher Snyder

Nicolas Bouchard

Nicolas Boulanger-Lewandowski

Xavier Bouthillier

Alexandre De Brébisson

Olivier Breuleux … (see 92 more)

pierre luc carrier

Kyunghyun Cho

Jan Chorowski

Paul F. Christiano

Tim Cooijmans

Marc-Alexandre Côté

Myriam Côté

Aaron Courville

Yann Dauphin

Olivier Delalleau

Julien Demouth

Guillaume Desjardins

Sander Dieleman

Laurent Dinh

M'elanie Ducoffe

Vincent Dumoulin

Samira Ebrahimi Kahou

Dumitru Erhan

Ziye Fan

Orhan Firat

Mathieu Germain

Xavier Glorot

Ian J. Goodfellow

Matthew Graham

Caglar Gulcehre

Philippe Hamel

Iban Harlouchet

Jean-philippe Heng

Balázs Hidasi

Sina Honari

Arjun Jain

S'ebastien Jean

Kai Jia

Mikhail V. Korobov

Vivek Kulkarni

Alex Lamb

Pascal Lamblin

Eric P. Larsen

César Laurent

S. Lee

Simon-mark Lefrancois

Simon Lemieux

Nicholas Léonard

Zhouhan Lin

J. Livezey

Cory R. Lorenz

Jeremiah L. Lowin

Qianli M. Ma

Pierre-Antoine Manzagol

Olivier Mastropietro

R. McGibbon

Roland Memisevic

Bart van Merriënboer

Vincent Michalski

Mehdi Mirza

Alberto Orlandi

Chris Pal

Razvan Pascanu

Mohammad Pezeshki

Colin Raffel

Daniel Renshaw

Matthew David Rocklin

Adriana Romero Soriano

Markus Dr. Roth

Peter Sadowski

John Salvatier

Francois Savard

Jan Schlüter

John D. Schulman

Gabriel Schwartz

Iulian V. Serban

Dmitriy Serdyuk

Samira Shabanian

Etienne Simon

Sigurd Spieckermann

S. Subramanyam

Jakub Sygnowski

Jérémie Tanguay

Gijs van Tulder

Joseph P. Turian

Sebastian Urban

Pascal Vincent

Francesco Visin

Harm de Vries

David Warde-Farley

Dustin J. Webb

M. Willson

Kelvin Xu

Lijun Xue

Li Yao

Saizheng Zhang

Ying Zhang

Theano is a Python library that allows to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficie… (see more)ntly. Since its introduction, it has been one of the most used CPU and GPU mathematical compilers - especially in the machine learning community - and has shown steady performance improvements. Theano is being actively and continuously developed since 2008, multiple frameworks have been built on top of it and it has been used to produce many state-of-the-art machine learning models. The present article is structured as follows. Section I provides an overview of the Theano software and its community. Section II presents the principal features of Theano and how to use them, and compares them with other similar projects. Section III focuses on recently-introduced functionalities and improvements. Section IV compares the performance of Theano against Torch7 and TensorFlow on several machine learning models. Section V discusses current limitations of Theano and potential ways of improving it.

2016-05-09

ArXiv (preprint)