Portrait of Kaleem Siddiqi

Kaleem Siddiqi

Associate Academic Member
Professor, McGill University, School of Computer Science
Research Topics
AI and Healthcare
Computational Biology
Computational Neuroscience
Computer Vision
Medical Machine Learning
Robotics
Website
Google Scholar

Biography

Kaleem Siddiqi is a Professor of Computer Science at McGill University, and a member of McGill’s Centre for Intelligent Machines. He serves as the Associate Dean Research for the Faculty of Science at McGill, which hosts 275 research active professors across the Departments of Atmospheric and Oceanic Sciences, Biology, Chemistry, Computer Science, Earth and Planetary Sciences, Geography, Mathematics and Statistics, Physics, and Psychology.

He is an Associate Academic Member of Mila, McGill’s Department of Mathematics and Statistics and the Goodman Centre for Cancer Research at McGill. He holds an FRQS Dual Chair in Health and AI. His present research interests span topics in applied mathematics computer vision, biological image analysis, machine learning, neuroscience, robotics and visual perception. He serves as Field Chief Editor of the journal Frontiers in Computer Science and has served as an associate editor of the IEEE Transactions on Pattern Analysis and Machine Intelligence (PAMI), Pattern Recognition and Frontiers in ICT.

Current Students

Kathie Cai
PhD - McGill University
Github
Elise Donszelmann-Lund
Master's Research - McGill University
Sophie Ellwood
Master's Research - McGill University
Website
Github
Google Scholar
Dima Fedorenko
PhD - McGill University
Github
Google Scholar
Isabel Frolick
Master's Research - McGill University
Github
Faizan Jilani
Master's Research - McGill University
Ben Lo
PhD - McGill University
Megan Ng
PhD - McGill University
Marc Theveneau
PhD - McGill University
Github

Publications

Ultrastructure Analysis of Cardiomyocytes and Their Nuclei
Tabish A Syed
Yanan Wang
Drisya Dileep
Minhajuddin Sirajuddin
Kaleem Siddiqi
2023-01-01
Functional Imaging and Modeling of the Heart (published)
doi.org
Predicting histopathology markers of endometrial carcinoma with a quantitative image analysis approach based on spherical harmonics in multiparametric MRI.
Thierry L. Lefebvre
Ozan Ciga
Sahir Bhatnagar
Yoshiko Ueno
S. Saif
Eric Winter-Reinhold
Anthony Dohan
P. Soyer
Reza Forghani
Kaleem Siddiqi
Jan Seuntjens
Caroline Reinhold
Peter Savadjiev
2022-10-01
Diagnostic and Interventional Imaging (published)
doi.org
Medial Spectral Coordinates for 3D Shape Analysis
Morteza Rezanejad
Mohammad Khodadad
Hamidreza Mahyar
Hervé Lombaert
Michael Gruninger
Dirk B. Walther
Kaleem Siddiqi
In recent years there has been a resurgence of interest in our community in the shape analysis of 3D objects repre-sented by surface meshes,… (see more) their voxelized interiors, or surface point clouds. In part, this interest has been stimulated by the increased availability of RGBD cameras, and by applications of computer vision to autonomous driving, medical imaging, and robotics. In these settings, spectral co-ordinates have shown promise for shape representation due to their ability to incorporate both local and global shape properties in a manner that is qualitatively invariant to iso-metric transformations. Yet, surprisingly, such coordinates have thus far typically considered only local surface positional or derivative information. In the present article, we propose to equip spectral coordinates with medial (object width) information, so as to enrich them. The key idea is to couple surface points that share a medial ball, via the weights of the adjacency matrix. We develop a spectral feature using this idea, and the algorithms to compute it. The incorporation of object width and medial coupling has direct benefits, as illustrated by our experiments on object classification, object part segmentation, and surface point correspondence.
2022-06-18
2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) (published)
doi.org
arxiv.org
Neural correlates of local parallelism during naturalistic vision
John Wilder
Morteza Rezanejad
Sven J. Dickinson
Kaleem Siddiqi
A. Jepson
Dirk. B. Walther
Human observers can rapidly perceive complex real-world scenes. Grouping visual elements into meaningful units is an integral part of this p… (see more)rocess. Yet, so far, the neural underpinnings of perceptual grouping have only been studied with simple lab stimuli. We here uncover the neural mechanisms of one important perceptual grouping cue, local parallelism. Using a new, image-computable algorithm for detecting local symmetry in line drawings and photographs, we manipulated the local parallelism content of real-world scenes. We decoded scene categories from patterns of brain activity obtained via functional magnetic resonance imaging (fMRI) in 38 human observers while they viewed the manipulated scenes. Decoding was significantly more accurate for scenes containing strong local parallelism compared to weak local parallelism in the parahippocampal place area (PPA), indicating a central role of parallelism in scene perception. To investigate the origin of the parallelism signal we performed a model-based fMRI analysis of the public BOLD5000 dataset, looking for voxels whose activation time course matches that of the locally parallel content of the 4916 photographs viewed by the participants in the experiment. We found a strong relationship with average local symmetry in visual areas V1-4, PPA, and retrosplenial cortex (RSC). Notably, the parallelism-related signal peaked first in V4, suggesting V4 as the site for extracting paralleism from the visual input. We conclude that local parallelism is a perceptual grouping cue that influences neuronal activity throughout the visual hierarchy, presumably starting at V4. Parallelism plays a key role in the representation of scene categories in PPA.
2022-01-21
PLoS ONE (published)
doi.org
Neural correlates of local parallelism during naturalistic vision
John Wilder
Morteza Rezanejad
Sven Dickinson
Kaleem Siddiqi
Allan Jepson
Dirk B. Walther
Human observers can rapidly perceive complex real-world scenes. Grouping visual elements into meaningful units is an integral part of this p… (see more)rocess. Yet, so far, the neural underpinnings of perceptual grouping have only been studied with simple lab stimuli. We here uncover the neural mechanisms of one important perceptual grouping cue, local parallelism. Using a new, image-computable algorithm for detecting local symmetry in line drawings and photographs, we manipulated the local parallelism content of real-world scenes. We decoded scene categories from patterns of brain activity obtained via functional magnetic resonance imaging (fMRI) in 38 human observers while they viewed the manipulated scenes. Decoding was significantly more accurate for scenes containing strong local parallelism compared to weak local parallelism in the parahippocampal place area (PPA), indicating a central role of parallelism in scene perception. To investigate the origin of the parallelism signal we performed a model-based fMRI analysis of the public BOLD5000 dataset, looking for voxels whose activation time course matches that of the locally parallel content of the 4916 photographs viewed by the participants in the experiment. We found a strong relationship with average local symmetry in visual areas V1-4, PPA, and retrosplenial cortex (RSC). Notably, the parallelism-related signal peaked first in V4, suggesting V4 as the site for extracting paralleism from the visual input. We conclude that local parallelism is a perceptual grouping cue that influences neuronal activity throughout the visual hierarchy, presumably starting at V4. Parallelism plays a key role in the representation of scene categories in PPA.
2022-01-21
PLoS ONE (published)
doi.org
Medial Spectral Coordinates for 3D Shape Analysis
Morteza Rezanejad
Mohammad Khodadad
H. Mahyar
Hervé Lombaert
M. Gruninger
Dirk. B. Walther
Kaleem Siddiqi
In recent years there has been a resurgence of interest in our community in the shape analysis of 3D objects repre-sented by surface meshes,… (see more) their voxelized interiors, or surface point clouds. In part, this interest has been stimulated by the increased availability of RGBD cameras, and by applications of computer vision to autonomous driving, medical imaging, and robotics. In these settings, spectral co-ordinates have shown promise for shape representation due to their ability to incorporate both local and global shape properties in a manner that is qualitatively invariant to iso-metric transformations. Yet, surprisingly, such coordinates have thus far typically considered only local surface positional or derivative information. In the present article, we propose to equip spectral coordinates with medial (object width) information, so as to enrich them. The key idea is to couple surface points that share a medial ball, via the weights of the adjacency matrix. We develop a spectral feature using this idea, and the algorithms to compute it. The incorporation of object width and medial coupling has direct benefits, as illustrated by our experiments on object classification, object part segmentation, and surface point correspondence.
2021-11-26
ArXiv (preprint)
doi.org
arxiv.org