Guillaume Lajoie

Biography

Guillaume Lajoie is an Associate professor in the Department of Mathematics and Statistics at Université de Montréal and a Core Academic Member of Mila – Quebec Artificial Intelligence Institute. He holds a Canada-CIFAR AI Research Chair, and a Canada Research Chair (CRC) in Neural Computation and Interfacing.

His research is positioned at the intersection of AI and Neuroscience where he develops tools to better understand mechanisms of intelligence common to both biological and artificial systems. His research group's contributions range from advances in multi-scale learning paradigms for large artificial systems, to applications in neurotechnology. Dr. Lajoie is actively involved in responsible AI development efforts, seeking to identify guidelines and best practices for use of AI in research and beyond.

Current Students

Federico Arangath Joseph

Collaborating researcher - ETH Zurich

Rohan Banerjee

Collaborating Alumni - Polytechnique Montréal

Independent visiting researcher

Principal supervisor :

Yoshua Bengio

Sangnie Bhardwaj

PhD - Université de Montréal

Co-supervisor :

Hugo Larochelle

Colin Bredenberg

Postdoctorate - Université de Montréal

Co-supervisor :

Blake Richards

Leo Choiniere

PhD - Université de Montréal

Olivier Codol

Postdoctorate - Université de Montréal

Co-supervisor :

PhD - Université de Montréal

Principal supervisor :

Leo Gagnon

PhD - Université de Montréal

Tom George

Postdoctorate - McGill University

Principal supervisor :

Juan Guerra

Master's Research - Polytechnique Montréal

Principal supervisor :

Nanda Harishankar Krishna

PhD - Université de Montréal

Anna Jahn

Independent visiting researcher - McGill University

Chen Jiang

PhD - McGill University

Principal supervisor :

Paul Masset

Thomas Jiralerspong

PhD - Université de Montréal

Co-supervisor :

Master's Research - Université de Montréal

Co-supervisor :

PhD - McGill University

Principal supervisor :

Blake Richards

Mathys Loiselle

Research Intern - Concordia University

Co-supervisor :

Ximeng Mao

PhD - Université de Montréal

Co-supervisor :

Abdel Mfougouon Njupoun

PhD - Université de Montréal

Co-supervisor :

PhD - Université de Montréal

Co-supervisor :

Collaborating researcher - Université de Montréal

Mohammad Pezeshki

Collaborating researcher

Principal supervisor :

Irina Rish

Julia Price

Master's Research - Université de Montréal

Mauricio Rivera

Master's Research - Université de Montréal

Principal supervisor :

Marco Bonizzato

Avery Ryoo

PhD - Université de Montréal

Principal supervisor :

PhD - Université de Montréal

Co-supervisor :

Lune Bellec

Ryan Vogt

Postdoctorate - Université de Montréal

Ezekiel Williams

PhD - Université de Montréal

Jieyu Zhao

Independent visiting researcher - University of South California

Machine Learning for the Segmentation of Different Nerve Fibre Activations from Brain-to-body Neural Signals

Blog Posts

Représentation graphique d'un nerf vague

May 21, 2025

Param Raval

Olivier Tessier-Larivière

Pascal Fortier-Poisson

Blake Richards

Guillaume Lajoie

Read the article

June 13, 2024

What Do Synaptic Weight Distributions Tell Us About Learning in the Brain ?

Roman Pogodin

Jonathan Cornford

Arna Ghosh

Gauthier Gidel

Guillaume Lajoie

Blake Richards

Read the article

Publications

Sufficient Conditions for Offline Reactivation in Recurrent Neural Networks

Nanda H Krishna

Colin Bredenberg

Daniel Levenstein

Blake Aaron Richards

During periods of quiescence, such as sleep, neural activity in many brain circuits resembles that observed during periods of task engagemen… (see more)t. However, the precise conditions under which task-optimized networks can autonomously reactivate the same network states responsible for online behavior is poorly understood. In this study, we develop a mathematical framework that outlines sufficient conditions for the emergence of neural reactivation in circuits that encode features of smoothly varying stimuli. We demonstrate mathematically that noisy recurrent networks optimized to track environmental state variables using change-based sensory information naturally develop denoising dynamics, which, in the absence of input, cause the network to revisit state configurations observed during periods of online activity. We validate our findings using numerical experiments on two canonical neuroscience tasks: spatial position estimation based on self-motion cues, and head direction estimation based on angular velocity cues. Overall, our work provides theoretical support for modeling offline reactivation as an emergent consequence of task optimization in noisy neural circuits.

2024-01-15

International Conference on Learning Representations (poster)

Synaptic Weight Distributions Depend on the Geometry of Plasticity

Blake Aaron Richards

A growing literature in computational neuroscience leverages gradient descent and learning algorithms that approximate it to study synaptic … (see more)plasticity in the brain. However, the vast majority of this work ignores a critical underlying assumption: the choice of distance for synaptic changes - i.e. the geometry of synaptic plasticity. Gradient descent assumes that the distance is Euclidean, but many other distances are possible, and there is no reason that biology necessarily uses Euclidean geometry. Here, using the theoretical tools provided by mirror descent, we show that the distribution of synaptic weights will depend on the geometry of synaptic plasticity. We use these results to show that experimentally-observed log-normal weight distributions found in several brain areas are not consistent with standard gradient descent (i.e. a Euclidean geometry), but rather with non-Euclidean distances. Finally, we show that it should be possible to experimentally test for different synaptic geometries by comparing synaptic weight distributions before and after learning. Overall, our work shows that the current paradigm in theoretical work on synaptic plasticity that assumes Euclidean synaptic geometry may be misguided and that it should be possible to experimentally determine the true geometry of synaptic plasticity in the brain.

2024-01-15

ICLR.cc/2024/Conference (spotlight)

Personalized inference for neurostimulation with meta-learning: a case study of vagus nerve stimulation

Ximeng Mao

Yao-Chuan Chang

Stavros Zanos

2024-01-11

Journal of Neural Engineering (published)

A benchmark of individual auto-regressive models in a massive fMRI dataset

François Paugam

Basile Pinsard

Pierre Bellec

Dense functional magnetic resonance imaging datasets open new avenues to create auto-regressive models of brain activity. Individual idiosyn… (see more)crasies are obscured by group models, but can be captured by purely individual models given sufficient amounts of training data. In this study, we compared several deep and shallow individual models on the temporal auto-regression of BOLD time-series recorded during a natural video-watching task. The best performing models were then analyzed in terms of their data requirements and scaling, subject specificity, and the space-time structure of their predicted dynamics. We found the Chebnets, a type of graph convolutional neural network, to be best suited for temporal BOLD auto-regression, closely followed by linear models. Chebnets demonstrated an increase in performance with increasing amounts of data, with no complete saturation at 9 h of training data. Good generalization to other kinds of video stimuli and to resting-state data marked the Chebnets’ ability to capture intrinsic brain dynamics rather than only stimulus-specific autocorrelation patterns. Significant subject specificity was found at short prediction time lags. The Chebnets were found to capture lower frequencies at longer prediction time lags, and the spatial correlations in predicted dynamics were found to match traditional functional connectivity networks. Overall, these results demonstrate that large individual functional magnetic resonance imaging (fMRI) datasets can be used to efficiently train purely individual auto-regressive models of brain activity, and that massive amounts of individual data are required to do so. The excellent performance of the Chebnets likely reflects their ability to combine spatial and temporal interactions on large time scales at a low complexity cost. The non-linearities of the models did not appear as a key advantage. In fact, surprisingly, linear versions of the Chebnets appeared to outperform the original non-linear ones. Individual temporal auto-regressive models have the potential to improve the predictability of the BOLD signal. This study is based on a massive, publicly-available dataset, which can serve for future benchmarks of individual auto-regressive modeling.

2023-12-31

Imaging Neuroscience (published)

Sources of Richness and Ineffability for Phenomenally Conscious States

Xu Ji

Eric Elmoznino

George Deane

Axel Constant

Guillaume Dumas

Jonathan Simon

Yoshua Bengio

Conscious states (states that there is something it is like to be in) seem both rich or full of detail, and ineffable or hard to fully descr… (see more)ibe or recall. The problem of ineffability, in particular, is a longstanding issue in philosophy that partly motivates the explanatory gap: the belief that consciousness cannot be reduced to underlying physical processes. Here, we provide an information theoretic dynamical systems perspective on the richness and ineffability of consciousness. In our framework, the richness of conscious experience corresponds to the amount of information in a conscious state and ineffability corresponds to the amount of information lost at different stages of processing. We describe how attractor dynamics in working memory would induce impoverished recollections of our original experiences, how the discrete symbolic nature of language is insufficient for describing the rich and high-dimensional structure of experiences, and how similarity in the cognitive function of two individuals relates to improved communicability of their experiences to each other. While our model may not settle all questions relating to the explanatory gap, it makes progress toward a fully physicalist explanation of the richness and ineffability of conscious experience: two important aspects that seem to be part of what makes qualitative character so puzzling.

2023-12-31

Neuroscience of Consciousness (published)

arxiv.org

Large language models: What could they do for neurology?

2023-11-30

Journal of the Neurological Sciences (published)

Discrete, compositional, and symbolic representations through attractor dynamics

Andrew Nam

Chen Sun

Compositionality is an important feature of discrete symbolic systems, such as language and programs, as it enables them to have infinite ca… (see more)pacity despite a finite symbol set. It serves as a useful abstraction for reasoning in both cognitive science and in AI, yet the interface between continuous and symbolic processing is often imposed by fiat at the algorithmic level, such as by means of quantization or a softmax sampling step. In this work, we explore how discretization could be implemented in a more neurally plausible manner through the modeling of attractor dynamics that partition the continuous representation space into basins that correspond to sequences of symbols. Building on established work in attractor networks and introducing novel training methods, we show that imposing structure in the symbolic space can produce compositionality in the attractor-supported representation space of rich sensory inputs. Lastly, we argue that our model exhibits the process of an information bottleneck that is thought to play a role in conscious experience, decomposing the rich information of a sensory input into stable components encoding symbolic information.

2023-10-26

NeurIPS.cc/2023/Workshop/InfoCog (oral)

A Unified, Scalable Framework for Neural Population Decoding

Mehdi Azabou

Vinam Arora

Venkataramana Ganesh

Ximeng Mao

Santosh Nachimuthu

Michael J. Mendelson

Blake Richards

Matthew G. Perich

Eva L. Dyer

Our ability to use deep learning approaches to decipher neural activity would likely benefit from greater scale, in terms of both model size… (see more) and datasets. However, the integration of many neural recordings into one unified model is challenging, as each recording contains the activity of different neurons from different individual animals. In this paper, we introduce a training framework and architecture designed to model the population dynamics of neural activity across diverse, large-scale neural recordings. Our method first tokenizes individual spikes within the dataset to build an efficient representation of neural events that captures the fine temporal structure of neural activity. We then employ cross-attention and a PerceiverIO backbone to further construct a latent tokenization of neural population activities. Utilizing this architecture and training framework, we construct a large-scale multi-session model trained on large datasets from seven nonhuman primates, spanning over 158 different sessions of recording from over 27,373 neural units and over 100 hours of recordings. In a number of different tasks, we demonstrate that our pretrained model can be rapidly adapted to new, unseen sessions with unspecified neuron correspondence, enabling few-shot performance with minimal labels. This work presents a powerful new approach for building deep learning tools to analyze neural data and stakes out a clear path to training at scale.

2023-09-20

NeurIPS.cc/2023/Conference (poster)

Olivier Tessier-Larivière

Online Bayesian Optimization of Nerve Stimulation

Lorenz Wernisch

Tristan Edwards

Antonin Berthon

Elvijs Sarkans

Myrta Stoukidi

Pascal Fortier-Poisson

Max Pinkney

Michael Thornton

Catherine Hanley

Susannah Lee

Joel Jennings

Ben Appleton

Phillip Garsed

Bret Patterson

Buttinger Will

Samuel Gonshaw

Matjaž Jakopec

Sudhakaran Shunmugam

Jorin Mamen … (see 4 more)

Aleksi Tukiainen

Oliver Armitage

Emil Hewage

In bioelectronic medicine, neuromodulation therapies induce neural signals to the brain or organs modifying their function. Stimulation devi… (see more)ces, capable of triggering exogenous neural signals using electrical wave forms, require a complex and multi-dimensional parameter space in order to control such wave forms. Determining the best combination of parameters (wave form optimization, or dosing) for treating a particular patient’s illness is therefore challenging. Comprehensive parameter searching for an optimal stimulation effect is often infeasible in a clinical setting, due to the size of the parameter space. Restricting this space, however, may lead to sub-optimal therapeutic results, reduced responder rates, and adverse effects. As an alternative to a full parameter search, we present a flexible machine learning, data acquisition and processing framework for optimizing neural stimulation parameters requiring as few steps as possible using Bayesian optimization. Such optimization builds a model of the neural and physiological responses to stimulations enabling it to optimize stimulation parameters and to provide estimates of the accuracy of the response model. The vagus nerve innervates, among other thoracic and visceral organs, the heart, thus controlling heart rate and is therefore ideal for demonstrating the effectiveness of our approach. Main results. The efficacy of our optimization approach was first evaluated on simulated neural responses, then applied to vagus nerve stimulation intraoperatively in porcine subjects. Optimization converged quickly on parameters achieving target heart rates and optimizing neural B-fibre activations despite high intersubject variability. An optimized stimulation waveform was achieved in real time with far fewer stimulations than required by alternative optimization strategies, thus minimizing exposure to side effects. Uncertainty estimates helped avoiding stimulations outside a safe range. Our approach shows that a complex set of neural stimulation parameters can be optimized in real-time for a patient to achieve a personalized precision dosing.

2023-08-31

bioRxiv (preprint)

Flexible Phase Dynamics for Bio-Plausible Contrastive Learning

Ezekiel Williams

Colin Bredenberg

Many learning algorithms used as normative models in neuroscience or as candidate approaches for learning on neuromorphic chips learn by con… (see more)trasting one set of network states with another. These Contrastive Learning (CL) algorithms are traditionally implemented with rigid, temporally non-local, and periodic learning dynamics that could limit the range of physical systems capable of harnessing CL. In this study, we build on recent work exploring how CL might be implemented by biological or neurmorphic systems and show that this form of learning can be made temporally local, and can still function even if many of the dynamical requirements of standard training procedures are relaxed. Thanks to a set of general theorems corroborated by numerical experiments across several CL models, our results provide theoretical foundations for the study and development of CL methods for biological and neuromorphic neural networks.

2023-07-02

Proceedings of the 40th International Conference on Machine Learning (published)

proceedings.mlr.press

Exploring Exchangeable Dataset Amortization for Bayesian Posterior Inference

Sarthak Mittal

Niels Leif Bracher

Priyank Jaini

Marcus A Brubaker

Bayesian inference provides a natural way of incorporating uncertainties and different underlying theories when making predictions or analyz… (see more)ing complex systems. However, it requires computationally expensive routines for approximation, which have to be re-run when new data is observed and are thus infeasible to efficiently scale and reuse. In this work, we look at the problem from the perspective of amortized inference to obtain posterior parameter distributions for known probabilistic models. We propose a neural network-based approach that can handle exchangeable observations and amortize over datasets to convert the problem of Bayesian posterior inference into a single forward pass of a network. Our empirical analyses explore various design choices for amortized inference by comparing: (a) our proposed variational objective with forward KL minimization, (b) permutation-invariant architectures like Transformers and DeepSets, and (c) parameterizations of posterior families like diagonal Gaussian and Normalizing Flows. Through our experiments, we successfully apply amortization techniques to estimate the posterior distributions for different domains solely through inference.

2023-06-18

ICML.cc/2023/Workshop/SPIGM (poster)