Publications

It is now widely acknowledged that surveillance of antimicrobial resistance (AMR) must adopt a “One Health” (OH) approach to successfull… (see more)y address the significant threats this global public health issue poses to humans, animals, and the environment. While many protocols exist for the evaluation of surveillance, the specific aspect of the integration of a OH approach into surveillance systems for AMR and antimicrobial Use (AMU), suffers from a lack of common and accepted guidelines and metrics for its monitoring and evaluation functions. This article presents a conceptual framework to evaluate the integration of OH in surveillance systems for AMR and AMU, named the Integrated Surveillance System Evaluation framework (ISSE framework). The ISSE framework aims to assist stakeholders and researchers who design an overall evaluation plan to select the relevant evaluation questions and tools. The framework was developed in partnership with the Canadian Integrated Program for Antimicrobial Resistance Surveillance (CIPARS). It consists of five evaluation components, which consider the capacity of the system to: [1] integrate a OH approach, [2] produce OH information and expertise, [3] generate actionable knowledge, [4] influence decision-making, and [5] positively impact outcomes. For each component, a set of evaluation questions is defined, and links to other available evaluation tools are shown. The ISSE framework helps evaluators to systematically assess the different OH aspects of a surveillance system, to gain comprehensive information on the performance and value of these integrated efforts, and to use the evaluation results to refine and improve the surveillance of AMR and AMU globally.

2021-03-24

Frontiers in Veterinary Science (published)

Beyond Correlation versus Causation: Multi-brain Neuroscience Needs Explanation

Quentin Moreau

Guillaume Dumas

2021-03-19

Trends in Cognitive Sciences (published)

Intention estimation and controllable behaviour models for traffic merges

Aditya Mahajan

Takayasu Kumano

Yuji Yasui

This work focuses on decision making for automated driving vehicles in interaction rich scenarios like traffic merges in a flexibly assertiv… (see more)e yet safe manner. We propose a Q-learning based approach, that takes in active intention inferences as additional inputs besides the directly observed state inputs. The outputs of Q-function are processed to select a decision by a modulation function, which can control how assertively or defensively the agent behaves.

2021-03-18

SICE Journal of Control Measurement and System Integration (published)

Neural Function Modules with Sparse Arguments: A Dynamic Approach to Integrating Information across Layers

Alex Lamb

Anirudh Goyal

A. Slowik

Michael Curtis Mozer

Philippe Beaudoin

Yoshua Bengio

Feed-forward neural networks consist of a sequence of layers, in which each layer performs some processing on the information from the previ… (see more)ous layer. A downside to this approach is that each layer (or module, as multiple modules can operate in parallel) is tasked with processing the entire hidden state, rather than a particular part of the state which is most relevant for that module. Methods which only operate on a small number of input variables are an essential part of most programming languages, and they allow for improved modularity and code re-usability. Our proposed method, Neural Function Modules (NFM), aims to introduce the same structural capability into deep learning. Most of the work in the context of feed-forward networks combining top-down and bottom-up feedback is limited to classification problems. The key contribution of our work is to combine attention, sparsity, top-down and bottom-up feedback, in a flexible algorithm which, as we show, improves the results in standard classification, out-of-domain generalization, generative modeling, and learning representations in the context of reinforcement learning.

2021-03-18

Proceedings of The 24th International Conference on Artificial Intelligence and Statistics (published)

Quantum Tensor Networks, Stochastic Processes, and Weighted Automata

Siddarth Srinivasan

Sandesh M. Adhikary

Jacob Miller

Guillaume Rabusseau

Byron Boots

Modeling joint probability distributions over sequences has been studied from many perspectives. The physics community developed matrix prod… (see more)uct states, a tensor-train decomposition for probabilistic modeling, motivated by the need to tractably model many-body systems. But similar models have also been studied in the stochastic processes and weighted automata literature, with little work on how these bodies of work relate to each other. We address this gap by showing how stationary or uniform versions of popular quantum tensor network models have equivalent representations in the stochastic processes and weighted automata literature, in the limit of infinitely long sequences. We demonstrate several equivalence results between models used in these three communities: (i) uniform variants of matrix product states, Born machines and locally purified states from the quantum tensor networks literature, (ii) predictive state representations, hidden Markov models, norm-observable operator models and hidden quantum Markov models from the stochastic process literature,and (iii) stochastic weighted automata, probabilistic automata and quadratic automata from the formal languages literature. Such connections may open the door for results and methods developed in one area to be applied in another.

2021-03-18

Proceedings of The 24th International Conference on Artificial Intelligence and Statistics (published)

Stochastic Polyak Step-size for SGD: An Adaptive Learning Rate for Fast Convergence

Nicolas Loizou

Sharan Vaswani

Issam Hadj Laradji

Simon Lacoste-Julien

We propose a stochastic variant of the classical Polyak step-size (Polyak, 1987) commonly used in the subgradient method. Although computing… (see more) the Polyak step-size requires knowledge of the optimal function values, this information is readily available for typical modern machine learning applications. Consequently, the proposed stochastic Polyak step-size (SPS) is an attractive choice for setting the learning rate for stochastic gradient descent (SGD). We provide theoretical convergence guarantees for SGD equipped with SPS in different settings, including strongly convex, convex and non-convex functions. Furthermore, our analysis results in novel convergence guarantees for SGD with a constant step-size. We show that SPS is particularly effective when training over-parameterized models capable of interpolating the training data. In this setting, we prove that SPS enables SGD to converge to the true solution at a fast rate without requiring the knowledge of any problem-dependent constants or additional computational overhead. We experimentally validate our theoretical results via extensive experiments on synthetic and real datasets. We demonstrate the strong performance of SGD with SPS compared to state-of-the-art optimization methods when training over-parameterized models.

2021-03-18

Proceedings of The 24th International Conference on Artificial Intelligence and Statistics (published)

A Study of Condition Numbers for First-Order Optimization

Charles Guille-Escuret

Baptiste Goujaud

Manuela Girotti

Ioannis Mitliagkas

2021-03-18

Proceedings of The 24th International Conference on Artificial Intelligence and Statistics (published)

[Strengthening the culture of public health surveillance and population health monitoring].

Arnaud Chiolero

St'ephane Cullati

Public health surveillance is the systematic and ongoing collection, analysis and interpretation of data to produce information useful for d… (see more)ecision-making. With the development of data science, surveillance methods are evolving through access to big data. More data does not automatically mean more information. For example, the massive amounts of data on Covid-19 was not easily transformed in useful information for decision-making. Further, data scientists have often difficulties to make their analyses useful for decision-making. For the implementation of evidence-based and data-driven public health practice, the culture of public health surveillance and population health monitoring needs to be strengthened.

2021-03-17

Revue medicale suisse (published)

pubmed.ncbi.nlm.nih.gov

Price discounting as a hidden risk factor of energy drink consumption

Hiroshi Mamiya

Erica E. M. Moodie

Alexandra M. Schmidt

Yu Ma

Global consumption of caffeinated energy drinks (CED) has been increasing dramatically despite increasing evidence of their adverse health e… (see more)ffects. Temporary price discounting is a rarely investigated but potentially powerful food marketing tactic influencing purchasing of CED. Using grocery transaction records generated by food stores in Montreal, we investigated the association between price discounting and purchasing of CED across socio-economic status operationalized by education and income levels in store neighbourhood. The outcome, log-transformed weekly store-level sales of CED, was modelled as a function of store-level percent price discounting, store- and neighbourhood-level confounders, and an interaction term between discounting and each of tertile education and income in store neighbourhood. The model was separately fit to transactions from supermarkets, pharmacies, supercentres, and convenience stores. There were 18,743, 12,437, 3965, and 49,533 weeks of CED sales from supermarkets, pharmacies, supercentres, and convenience stores, respectively. Percent price discounting was positively associated with log sales of CED for all store types, and the interaction between education and discounting was prominent in supercentres: −0.039 [95% confidence interval (CI): −0.051, −0.028] and −0.039 [95% CI: −0.057, −0.021], for middle- and high-education neighbourhoods relative to low-education neighbourhoods, respectively. Relative to low-income areas, the associations of discounting and log CED sales in supercentres for neighbourhoods with middle- and high-income tertile were 0.022 [95% CI: 0.010, 0.033] and 0.015 (95% CI: −0.001, 0.031), respectively. Price discounting is an important driver of CED consumption and has a varying impact across community education and income.

2021-03-16

Canadian Journal of Public Health (published)

Local Data Debiasing for Fairness Based on Generative Adversarial Training

Ulrich Aivodji

François Bidet

Sébastien Gambs

Rosin Claude Ngueveu

Alain Tapp

The widespread use of automated decision processes in many areas of our society raises serious ethical issues with respect to the fairness o… (see more)f the process and the possible resulting discrimination. To solve this issue, we propose a novel adversarial training approach called GANSan for learning a sanitizer whose objective is to prevent the possibility of any discrimination (i.e., direct and indirect) based on a sensitive attribute by removing the attribute itself as well as the existing correlations with the remaining attributes. Our method GANSan is partially inspired by the powerful framework of generative adversarial networks (in particular Cycle-GANs), which offers a flexible way to learn a distribution empirically or to translate between two different distributions. In contrast to prior work, one of the strengths of our approach is that the sanitization is performed in the same space as the original data by only modifying the other attributes as little as possible, thus preserving the interpretability of the sanitized data. Consequently, once the sanitizer is trained, it can be applied to new data locally by an individual on their profile before releasing it. Finally, experiments on real datasets demonstrate the effectiveness of the approach as well as the achievable trade-off between fairness and utility.

2021-03-14

Algorithms (published)

Samira Abbasgholizadeh-Rahimi

Continuing professional education of Iranian healthcare professionals in shared decision-making: lessons learned

Charo Rodriguez

Jordie Croteau

Alireza Sadeghpour

Amir-Mohammad Navali

France Légaré

2021-03-12

BMC Health Services Research (published)

Staying Ahead of the Epidemiologic Curve: Evaluation of the British Columbia Asthma Prediction System (BCAPS) During the Unprecedented 2018 Wildfire Season

Sarah B. Henderson

Kathryn T. Morrison

Kathleen E. McLean

Yue Ding

Jiayun Yao

Gavin Shaddick

2021-03-12

Frontiers in Public Health (published)