Publications

VFA: Vision Frequency Analysis of Foundation Models and Human
Mohammad Javad Darvishi Bayazi
Md Rifat Arefin
Jocelyn Faubert
Irina Rish
Machine learning models often struggle with distribution shifts in real-world scenarios, whereas humans exhibit robust adaptation. Models th… (see more)at better align with human perception may achieve higher out-of-distribution generalization. In this study, we investigate how various characteristics of large-scale computer vision models influence their alignment with human capabilities and robustness. Our findings indicate that increasing model and data size, along with incorporating rich semantic information and multiple modalities, significantly enhances models' alignment with human perception and their overall robustness. Our empirical analysis demonstrates a strong correlation between out-of-distribution accuracy and human alignment.
2024-07-03
ICML.cc/2024/Workshop/FM-Wild (poster)
openreview.net
openreview.net
VFA: Vision Frequency Analysis of Foundation Models and Human
Mohammad Javad Darvishi Bayazi
Md Rifat Arefin
Jocelyn Faubert
Irina Rish
2024-07-03
ICML.cc/2024/Workshop/FM-Wild (poster)
doi.org
openreview.net
Automatic Segmentation of the Spinal Cord Nerve Rootlets
Jan Valošek
Theo Mathieu
Raphaëlle Schlienger
Olivia S. Kowalczyk
Julien Cohen-Adad
Precise identification of spinal nerve rootlets is relevant to delineate spinal levels for the study of functional activity in the spinal co… (see more)rd. The goal of this study was to develop an automatic method for the semantic segmentation of spinal nerve rootlets from T2-weighted magnetic resonance imaging (MRI) scans. Images from two open-access MRI datasets were used to train a 3D multi-class convolutional neural network using an active learning approach to segment C2-C8 dorsal nerve rootlets. Each output class corresponds to a spinal level. The method was tested on 3T T2-weighted images from datasets unseen during training to assess inter-site, inter-session, and inter-resolution variability. The test Dice score was 0.67 +- 0.16 (mean +- standard deviation across rootlets levels), suggesting a good performance. The method also demonstrated low inter-vendor and inter-site variability (coefficient of variation= 1.41 %), as well as low inter-session variability (coefficient of variation= 1.30 %) indicating stable predictions across different MRI
2024-07-02
Imaging Neuroscience (published)
doi.org
arxiv.org
A Bayesian Non-Stationary Heteroskedastic Time Series Model for Multivariate Critical Care Data
Zayd Omar
David A. Stephens
Alexandra M. Schmidt
David Buckeridge
2024-07-02
Statistics in Medicine (published)
doi.org
arxiv.org
Temperature-dependent Spike-ACE2 interaction of Omicron subvariants is associated with viral transmission
Mehdi Benlarbi
Shilei Ding
Étienne Bélanger
Alexandra Tauzin
Raphael Poujol
Halima Medjahed
Omar El Ferri
Yuxia Bo
Catherine Bourassa
Julie Hussin
Judith Fafard
Marzena Pazgier
Inès Levade
Cameron Abrams
Marceline Côté
Andrés Finzi
The continued evolution of SARS-CoV-2 requires persistent monitoring of its subvariants. Omicron subvariants are responsible for the vast ma… (see more)jority of SARS-CoV-2 infections worldwide, with XBB and BA.2.86 sublineages representing more than 90% of circulating strains as of January 2024. In this study, we characterized the functional properties of Spike glycoproteins from BA.2.75, CH.1.1, DV.7.1, BA.4/5, BQ.1.1, XBB, XBB.1, XBB.1.16, XBB.1.5, FD.1.1, EG.5.1, HK.3 BA.2.86 and JN.1. We tested their capacity to evade plasma-mediated recognition and neutralization, ACE2 binding, their susceptibility to cold inactivation, Spike processing, as well as the impact of temperature on Spike-ACE2 interaction. We found that compared to the early wild-type (D614G) strain, most Omicron subvariants Spike glycoproteins evolved to escape recognition and neutralization by plasma from individuals who received a fifth dose of bivalent (BA.1 or BA.4/5) mRNA vaccine and improve ACE2 binding, particularly at low temperatures. Moreover, BA.2.86 had the best affinity for ACE2 at all temperatures tested. We found that Omicron subvariants Spike processing is associated with their susceptibility to cold inactivation. Intriguingly, we found that Spike-ACE2 binding at low temperature was significantly associated with growth rates of Omicron subvariants in humans. Overall, we report that Spikes from newly emerged Omicron subvariants are relatively more stable and resistant to plasma-mediated neutralization, present improved affinity for ACE2 which is associated, particularly at low temperatures, with their growth rates.
2024-07-02
mBio (published)
doi.org
Towards More Realistic Extraction Attacks: An Adversarial Perspective
Yash More
Prakhar Ganesh
Golnoosh Farnadi
2024-07-02
ArXiv (preprint)
doi.org
arxiv.org
169Yb-based high dose rate intensity modulated brachytherapy for focal treatment of prostate cancer
Maude Robitaille
Cynthia Ménard
Gabriel Famulari
Dominic Béliveau-Nadeau
Shirin A. Enger
2024-07-01
Brachytherapy (published)
doi.org
Accelerated Benders Decomposition and Local Branching for Dynamic Maximum Covering Location Problems
Steven Lamontagne
Margarida Carvalho
Ribal Atallah
The maximum covering location problem (MCLP) is a key problem in facility location, with many applications and variants. One such variant is… (see more) the dynamic (or multi-period) MCLP, which considers the installation of facilities across multiple time periods. To the best of our knowledge, no exact solution method has been proposed to tackle large-scale instances of this problem. To that end, in this work, we expand upon the current state-of-the-art branch-and-Benders-cut solution method in the static case, by exploring several acceleration techniques. Additionally, we propose a specialised local branching scheme, that uses a novel distance metric in its definition of subproblems and features a new method for efficient and exact solving of the subproblems. These methods are then compared through extensive computational experiments, highlighting the strengths of the proposed methodologies.
2024-07-01
Computers & Operations Research (published)
doi.org
arxiv.org
Expressivity of Neural Networks with Random Weights and Learned Biases
Ezekiel Williams
Avery Hee-Woon Ryoo
Thomas Jiralerspong
Alexandre Payeur
Matt Perich
Luca Mazzucato
Guillaume Lajoie
2024-07-01
ArXiv (preprint)
doi.org
arxiv.org
Imagining a Future of Designing with AI: Dynamic Grounding, Constructive Negotiation, and Sustainable Motivation
Priyan Vaithilingam
Ian Arawjo
Elena L. Glassman
2024-07-01
Designing Interactive Systems Conference (published)
doi.org
arxiv.org
Do LLMs Meet the Needs of Software Tutorial Writers? Opportunities and Design Implications
Avinash Bhat
Disha Shrivastava
Jin Guo
Creating software tutorials involves developing accurate code examples and explanatory text that engages and informs the reader. Large Langu… (see more)age Models (LLMs) demonstrate a strong capacity to generate both text and code, but their potential to assist tutorial writing is unknown. By interviewing and observing seven experienced writers using OpenAI playground as an exploration environment, we uncover design opportunities for leveraging LLMs in software tutorial writing. Our findings reveal background research, resource creation, and maintaining quality standards as critical areas where LLMs could significantly assist writers. We observe how tutorial writers generated tutorial content while exploring LLMs’ capabilities, formulating prompts, verifying LLM outputs, and reflecting on interaction goals and strategies. Our observation highlights that the unpredictability of LLM outputs and unintuitive interface design contributed to skepticism about LLM’s utility. Informed by these results, we contribute recommendations for designing LLM-based tutorial writing tools to mitigate usability challenges and harness LLMs’ full potential.
2024-07-01
Conference on Designing Interactive Systems (published)
doi.org
A logistics provider’s profit maximization facility location problem with random utility maximizing followers
David Pinzon Ulloa
Emma Frejinger
Bernard Gendron
2024-07-01
Computers & Operations Research (published)
doi.org
arxiv.org