Publications

VisPaD: Visualization and Pattern Discovery for Fighting Human Trafficking

Pratheeksha Nair

Yifei Li

Catalina Vajiac

Andreas Olligschlaeger

Meng-Chieh Lee

Namyong Park

Duen Horng Chau

Christos Faloutsos

Reihaneh Rabbany

Chieh Lee

2022-04-24

The Web Conference (published)

doi.org

RetroGNN: Fast Estimation of Synthesizability for Virtual Screening and De Novo Design by Learning from Slow Retrosynthesis Software

Cheng-Hao Liu

Maksym Korablyov

Stanisław Jastrzębski

Paweł Włodarczyk-Pruszyński

Yoshua Bengio

Marwin Segler

2022-04-21

Journal of Chemical Information and Modeling (published)

doi.org

Learning how to Interact with a Complex Interface using Hierarchical Reinforcement Learning

Gheorghe Comanici

Amelia Glaese

Anita Gergely

Daniel Toyama

Zafarali Ahmed

Tyler Jackson

Philippe Hamel

Doina Precup

Hierarchical Reinforcement Learning (HRL) allows interactive agents to decompose complex problems into a hierarchy of sub-tasks. Higher-leve… (see more)l tasks can invoke the solutions of lower-level tasks as if they were primitive actions. In this work, we study the utility of hierarchical decompositions for learning an appropriate way to interact with a complex interface. Specifically, we train HRL agents that can interface with applications in a simulated Android device. We introduce a Hierarchical Distributed Deep Reinforcement Learning architecture that learns (1) subtasks corresponding to simple finger gestures, and (2) how to combine these gestures to solve several Android tasks. Our approach relies on goal conditioning and can be used more generally to convert any base RL agent into an HRL agent. We use the AndroidEnv environment to evaluate our approach. For the experiments, the HRL agent uses a distributed version of the popular DQN algorithm to train different components of the hierarchy. While the native action space is completely intractable for simple DQN agents, our architecture can be used to establish an effective way to interact with different tasks, significantly improving the performance of the same DQN agent over different levels of abstraction.

2022-04-20

ArXiv (preprint)

doi.org

arxiv.org

Local Learning with Neuron Groups

Adeetya Patel

Michael Eickenberg

Eugene Belilovsky

2022-04-20

ICLR.cc/2022/Workshop/Cells2Societies (poster)

doi.org

openreview.net

A Strong Node Classification Baseline for Temporal Graphs

Farimah Poursafaei

Željko Žilić

Reihaneh Rabbany

2022-04-19

Proceedings of the 2022 SIAM International Conference on Data Mining (SDM) (published)

doi.org

Microscopy-BIDS: An Extension to the Brain Imaging Data Structure for Microscopy Data

Marie-Hélène Bourget

Lee Kamentsky

Satrajit S. Ghosh

Giacomo Mazzamuto

Alberto Lazari

Christopher J. Markiewicz

Robert Oostenveld

Guiomar Niso

Yaroslav O. Halchenko

Ilona Lipp

Sylvain Takerkart

Paule-Joanne Toussaint

Ali R. Khan

Gustav Nilsonne

Filippo Maria Castelli

Stefan Ross Eric Franklin Anthony Rémi Christopher J. Taylor Appelhoff

Julien Cohen-Adad

The Brain Imaging Data Structure (BIDS) is a specification for organizing, sharing, and archiving neuroimaging data and metadata in a reusab… (see more)le way. First developed for magnetic resonance imaging (MRI) datasets, the community-led specification evolved rapidly to include other modalities such as magnetoencephalography, positron emission tomography, and quantitative MRI (qMRI). In this work, we present an extension to BIDS for microscopy imaging data, along with example datasets. Microscopy-BIDS supports common imaging methods, including 2D/3D, ex/in vivo, micro-CT, and optical and electron microscopy. Microscopy-BIDS also includes comprehensible metadata definitions for hardware, image acquisition, and sample properties. This extension will facilitate future harmonization efforts in the context of multi-modal, multi-scale imaging such as the characterization of tissue microstructure with qMRI.

2022-04-18

Frontiers in Neuroscience (published)

doi.org

Masked Siamese Networks for Label-Efficient Learning

Mahmoud Assran

Mathilde Caron

Ishan Misra

Piotr Bojanowski

Florian Bordes

P Vincent

Armand Joulin

Michael G. Rabbat

Nicolas Ballas

We propose Masked Siamese Networks (MSN), a self-supervised learning framework for learning image representations. Our approach matches the … (see more)representation of an image view containing randomly masked patches to the representation of the original unmasked image. This self-supervised pre-training strategy is particularly scalable when applied to Vision Transformers since only the unmasked patches are processed by the network. As a result, MSNs improve the scalability of joint-embedding architectures, while producing representations of a high semantic level that perform competitively on low-shot image classification. For instance, on ImageNet-1K, with only 5,000 annotated images, our base MSN model achieves 72.4% top-1 accuracy, and with 1% of ImageNet-1K labels, we achieve 75.7% top-1 accuracy, setting a new state-of-the-art for self-supervised learning on this benchmark. Our code is publicly available.

2022-04-13

ArXiv (preprint)

doi.org

arxiv.org

Microscopy analysis neural network to solve detection, enumeration and segmentation from image-level annotations

Anthony Bilodeau

Constantin V.L. Delmas

Martin Parent

Paul De Koninck

Audrey Durand

Flavie Lavoie-Cardinal

2022-04-13