Publications

Automatic Segmentation of the Spinal Cord Nerve Rootlets
Jan Valošek
Theo Mathieu
Raphaëlle Schlienger
Olivia S. Kowalczyk
Julien Cohen-Adad
Precise identification of spinal nerve rootlets is relevant to delineate spinal levels for the study of functional activity in the spinal co… (see more)rd. The goal of this study was to develop an automatic method for the semantic segmentation of spinal nerve rootlets from T2-weighted magnetic resonance imaging (MRI) scans. Images from two open-access MRI datasets were used to train a 3D multi-class convolutional neural network using an active learning approach to segment C2-C8 dorsal nerve rootlets. Each output class corresponds to a spinal level. The method was tested on 3T T2-weighted images from datasets unseen during training to assess inter-site, inter-session, and inter-resolution variability. The test Dice score was 0.67 +- 0.16 (mean +- standard deviation across rootlets levels), suggesting a good performance. The method also demonstrated low inter-vendor and inter-site variability (coefficient of variation= 1.41 %), as well as low inter-session variability (coefficient of variation= 1.30 %) indicating stable predictions across different MRI
2024-02-01
ArXiv (preprint)
doi.org
arxiv.org
Co-developing The Canadian MPS Registry: A longitudinal rare disease patient registry
John J. Mitchell
Michal Inbar-Feigenberg
Kim Angel
Pranesh Chakraborty
Monica Lamoureux
John Adams
Beth K. Potter
Sylvia Stockler-Ipsirolgu
Alison H. Howie
Alex Pace
Nancy J. Butcher
Cheryl Greenberg
Robin Hayeems
Anne-Marie Laberge
Jeff Round
Martin Offringa
Maryam Oskoui
Chelsea Ruth
Andreas Schulze
Kathy N. Speechley … (see 4 more)
Kednapa Thavorn
Yannis Trakadis
Kumanan Wilson
Thierry Lacaze
2024-02-01
Molecular Genetics and Metabolism (published)
doi.org
Data science opportunities of large language models for neuroscience and biomedicine
Danilo Bzdok
Andrew Thieme
Oleksiy Levkovskyy
Paul Wren
Thomas Ray
Siva Reddy
2024-02-01
Neuron (published)
doi.org
Family‐centred care interventions for children with chronic conditions: A scoping review
Andrea J. Chow
Ammar Saad
Zobaida Al‐Baldawi
Ryan Iverson
Becky Skidmore
Isabel Jordan
Nicole Pallone
Maureen Smith
Pranesh Chakraborty
Jamie Brehaut
Eyal Cohen
Sarah Dyack
Jane Gillis
Sharan Goobie
Cheryl Greenberg
Robin Hayeems
Brian Hutton
Michal Inbar-Feigenberg
Shailly Jain-Ghai
Sara Khangura … (see 18 more)
Jennifer MacKenzie
John J. Mitchell
Zeinab Moazin
Stuart G. Nicholls
Amy Pender
Chitra Prasad
Andreas Schulze
Komudi Siriwardena
Rebecca N. Sparkes
Kathy N. Speechley
Sylvia Stockler
Monica Taljaard
Mari Teitelbaum
Yannis Trakadis
Clara Van Karnebeek
Jagdeep S. Walia
Kumanan Wilson
Beth K. Potter
2024-02-01
Health Expectations (published)
doi.org
GrowSpace: A reinforcement learning environment for plant architecture
Yasmeen Hitti
Ionelia Buzatu
Manuel Del Verme
Mark Lefsrud
Florian Golemo
Audrey Durand
2024-02-01
Computers and Electronics in Agriculture (published)
doi.org
Improving Pediatric Trauma Education by Teaching Non-technical Skills: A Randomized Controlled Trial
Fabio Botelho
Ayla Gerk
Jason M. Harley
Dan Poenaru
2024-02-01
Journal of Pediatric Surgery (published)
doi.org
Inter- and intra-year forest change detection and monitoring of aboveground biomass dynamics using Sentinel-2 and Landsat
Flavie Pelletier
Jeff Cardille
Michael A. Wulder
Joanne C. White
Txomin Hermosilla
2024-02-01
Remote Sensing of Environment (published)
doi.org
Linking biodiversity, ecosystem function, and Nature’s contributions to people: a macroecological energy flux perspective
Ana Carolina Antunes
Emilio Berti
Ulrich Brose
Myriam R. Hirt
Dirk N. Karger
Louise M. J. O'Connor
Laura J. Pollock
Wilfried Thuiller
Benoit Gauzens
2024-02-01
Trends in Ecology & Evolution (published)
doi.org
Machine Learning Informed Diagnosis for Congenital Heart Disease in Large Claims Data Source
Ariane Marelli
Chao Li
Aihua Liu
Hanh Nguyen
Harry Moroz
James M. Brophy
Liming Guo
David Buckeridge
Jian Tang
Archer Yang
Yue Li
2024-02-01
JACC: Advances (published)
doi.org
Neural semantic tagging for natural language-based search in building information models: Implications for practice
Mehrzad Shahinmoghadam
Samira Ebrahimi Kahou
Ali Motamedi
2024-02-01
Computers in industry (Print) (published)
doi.org
Properties and Styles of Software Technology Tutorials
Deeksha M. Arya
Jin Guo
Martin P. Robillard
A large number of tutorials for popular software development technologies are available online, and those about the same technology vary wid… (see more)ely in their presentation. We studied the design of tutorials in the software documentation landscape for five popular programming languages: Java, C#, Python, Javascript, and Typescript. We investigated the extent to which tutorial pages, i.e. resources, differ and report statistics of variations in resource properties. We developed a framework for characterizing resources based on their distinguishing attributes, i.e. properties that vary widely for the resource, relative to other resources. Additionally, we propose that a resource can be represented by its resource style, i.e. the combination of its distinguishing attributes. We discuss three techniques for characterizing resources based on our framework, to capture notable and relevant content and presentation properties of tutorial pages. We apply these techniques on a data set of 2551 resources to validate that our framework identifies valid and interpretable styles. We contribute this framework for reasoning about the design of resources in the online software documentation landscape.
2024-02-01
IEEE Transactions on Software Engineering (published)
doi.org
The Image Biomarker Standardization Initiative: Standardized Convolutional Filters for Reproducible Radiomics and Enhanced Clinical Insights
Philip Whybra
Alex Zwanenburg
Vincent Andrearczyk
Roger Schaer
Aditya P. Apte
Alexandre Ayotte
Bhakti Baheti
Spyridon Bakas
Andrea Bettinelli
Ronald Boellaard
Luca Boldrini
Irene Buvat
Gary J. R. Cook
Florian Dietsche
Nicola Dinapoli
Hubert S. Gabryś
Vicky Goh
Matthias Guckenberger
Mathieu Hatt
Mahdi Hosseinzadeh … (see 26 more)
Aditi Iyer
Jacopo Lenkowicz
Mahdi A. L. Loutfi
Steffen Löck
Francesca Marturano
Olivier Morin
Christophe Nioche
Fanny Orlhac
Sarthak Pati
Arman Rahmim
Seyed Masoud Rezaeijo
Christopher G. Rookyard
Mohammad R. Salmanpour
Andreas Schindele
Isaac Shiri
Emiliano Spezi
Stephanie Tanadini-Lang
Florent Tixier
Taman Upadhaya
Vincenzo Valentini
Joost J. M. van Griethuysen
Fereshteh Yousefirizi
Habib Zaidi
Henning Müller
Martin Vallières
Adrien Depeursinge
2024-02-01
Radiology (published)
doi.org