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Meng Qu

PhD - Université de Montréal
Supervisor

Publications

Prioritizing Safeguarding Over Autonomy: Risks of LLM Agents for Science
Xiangru Tang
Qiao Jin
Kunlun Zhu
Tongxin Yuan
Yichi Zhang
Wangchunshu Zhou
Meng Qu
Yilun Zhao
Zhuosheng Zhang
Arman Cohan
Zhiyong Lu
Mark Gerstein
GraphText: Graph Reasoning in Text Space
Jianan Zhao
Le Zhuo
Yikang Shen
Meng Qu
Kai Liu
Michael Bronstein
Zhaocheng Zhu
Large Language Models (LLMs) have gained the ability to assimilate human knowledge and facilitate natural language interactions with both hu… (see more)mans and other LLMs. However, despite their impressive achievements, LLMs have not made significant advancements in the realm of graph machine learning. This limitation arises because graphs encapsulate distinct relational data, making it challenging to transform them into natural language that LLMs understand. In this paper, we bridge this gap with a novel framework, GraphText, that translates graphs into natural language. GraphText derives a graph-syntax tree for each graph that encapsulates both the node attributes and inter-node relationships. Traversal of the tree yields a graph text sequence, which is then processed by an LLM to treat graph tasks as text generation tasks. Notably, GraphText offers multiple advantages. It introduces training-free graph reasoning: even without training on graph data, GraphText with ChatGPT can achieve on par with, or even surpassing, the performance of supervised-trained graph neural networks through in-context learning (ICL). Furthermore, GraphText paves the way for interactive graph reasoning, allowing both humans and LLMs to communicate with the model seamlessly using natural language. These capabilities underscore the vast, yet-to-be-explored potential of LLMs in the domain of graph machine learning.
Signed Laplacian Graph Neural Networks
Yu Li
Meng Qu
Yi Chang
Learning on Large-scale Text-attributed Graphs via Variational Inference
Jianan Zhao
Meng Qu
Chaozhuo Li
Hao Yan
Qian Liu
Rui Li
Xing Xie
This paper studies learning on text-attributed graphs (TAGs), where each node is associated with a text description. An ideal solution for s… (see more)uch a problem would be integrating both the text and graph structure information with large language models and graph neural networks (GNNs). However, the problem becomes very challenging when graphs are large due to the high computational complexity brought by training large language models and GNNs together. In this paper, we propose an efficient and effective solution to learning on large text-attributed graphs by fusing graph structure and language learning with a variational Expectation-Maximization (EM) framework, called GLEM. Instead of simultaneously training large language models and GNNs on big graphs, GLEM proposes to alternatively update the two modules in the E-step and M-step. Such a procedure allows training the two modules separately while simultaneously allowing the two modules to interact and mutually enhance each other. Extensive experiments on multiple data sets demonstrate the efficiency and effectiveness of the proposed approach.
Predicting Infectiousness for Proactive Contact Tracing
Prateek Gupta
Nasim Rahaman
Martin Weiss
Tristan Deleu
Meng Qu
Victor Schmidt
Pierre-Luc St-Charles
Hannah Alsdurf
Olexa Bilaniuk
gaetan caron
pierre luc carrier
Joumana Ghosn
satya ortiz gagne
Bernhard Schölkopf … (see 3 more)
abhinav sharma
andrew williams
The COVID-19 pandemic has spread rapidly worldwide, overwhelming manual contact tracing in many countries and resulting in widespread lockdo… (see more)wns for emergency containment. Large-scale digital contact tracing (DCT) has emerged as a potential solution to resume economic and social activity while minimizing spread of the virus. Various DCT methods have been proposed, each making trade-offs between privacy, mobility restrictions, and public health. The most common approach, binary contact tracing (BCT), models infection as a binary event, informed only by an individual's test results, with corresponding binary recommendations that either all or none of the individual's contacts quarantine. BCT ignores the inherent uncertainty in contacts and the infection process, which could be used to tailor messaging to high-risk individuals, and prompt proactive testing or earlier warnings. It also does not make use of observations such as symptoms or pre-existing medical conditions, which could be used to make more accurate infectiousness predictions. In this paper, we use a recently-proposed COVID-19 epidemiological simulator to develop and test methods that can be deployed to a smartphone to locally and proactively predict an individual's infectiousness (risk of infecting others) based on their contact history and other information, while respecting strong privacy constraints. Predictions are used to provide personalized recommendations to the individual via an app, as well as to send anonymized messages to the individual's contacts, who use this information to better predict their own infectiousness, an approach we call proactive contact tracing (PCT). We find a deep-learning based PCT method which improves over BCT for equivalent average mobility, suggesting PCT could help in safe re-opening and second-wave prevention.
COVI-AgentSim: an Agent-based Model for Evaluating Methods of Digital Contact Tracing
Prateek Gupta
Martin Weiss
Nasim Rahaman
Hannah Alsdurf
abhinav sharma
Nanor Minoyan
Soren Harnois-Leblanc
Victor Schmidt
Pierre-Luc St-Charles
Tristan Deleu
andrew williams
Akshay Patel
Meng Qu
Olexa Bilaniuk
gaetan caron
pierre luc carrier
satya ortiz gagne
Marc-Andre Rousseau
Joumana Ghosn
Yang Zhang
Bernhard Schölkopf
Joanna Merckx
COVI White Paper
Hannah Alsdurf
Tristan Deleu
Prateek Gupta
Daphne Ippolito
Richard Janda
Max Jarvie
Tyler J. Kolody
Sekoul Krastev
Robert Obryk
Dan Pilat
Valerie Pisano
Benjamin Prud'homme
Meng Qu
Nasim Rahaman
Jean-franois Rousseau
abhinav sharma
Brooke Struck … (see 3 more)
Martin Weiss
Yun William Yu
COVI White Paper-Version 1.1
Hannah Alsdurf
Tristan Deleu
Prateek Gupta
Daphne Ippolito
Richard Janda
Max Jarvie
Tyler J. Kolody
Sekoul Krastev
Robert Obryk
Dan Pilat
Valerie Pisano
Benjamin Prud'homme
Meng Qu
Nasim Rahaman
Jean-franois Rousseau
abhinav sharma
Brooke Struck … (see 3 more)
Martin Weiss
Yun William Yu
The SARS-CoV-2 (Covid-19) pandemic has resulted in significant strain on health care and public health institutions around the world. Contac… (see more)t tracing is an essential tool for public health officials and local communities to change the course of the Covid-19 pandemic. Standard manual contact tracing of people infected with Covid-19, while the current gold standard, has significant challenges that limit the ability of public health authorities to minimize community infections. Personalized peer-to-peer contact tracing through the use of mobile applications has the potential to shift the paradigm of Covid-19 community spread. Although some countries have deployed centralized tracking systems through either GPS or Bluetooth, more privacy-protecting decentralized systems offer much of the same benefit without concentrating data in the hands of a state authority or in for-profit corporations. Additionally, machine learning methods can be used to circumvent some of the limitations of standard digital tracing by incorporating many clues (including medical conditions, self-reported symptoms, and numerous encounters with people at different risk levels, for different durations and distances) and their uncertainty into a more graded and precise estimation of infection and contagion risk. The estimated risk can be used to provide early risk awareness, personalized recommendations and relevant information to the user and connect them to health services. Finally, the non-identifying data about these risks can inform detailed epidemiological models trained jointly with the machine learning predictor, and these models can provide statistical evidence for the interaction and importance of different factors involved in the transmission of the disease. They can also be used to monitor, evaluate and optimize different health policy and confinement/deconfinement scenarios according to medical and economic productivity indicators. However, such a strategy based on mobile apps and machine learning should proactively mitigate potential ethical and privacy risks, which could have substantial impacts on society (not only impacts on health but also impacts such as stigmatization and abuse of personal data). Here, we present an overview of the rationale, design, ethical considerations and privacy strategy of ‘COVI,’ a Covid-19 public peer-to-peer contact tracing and risk awareness mobile application developed in Canada. Addendum 2020-07-14: The government of Canada has declined to endorse COVI and will be promoting a different app for decentralized contact tracing. In the interest of preventing fragmentation of the app landscape, COVI will therefore not be deployed to end users. We are currently still in the process of finalizing the project, and plan to release our code and models for academic consumption and to make them accessible to other States should they wish to deploy an app based on or inspired by said code and models. University of Ottawa, Mila, Université de Montréal, The Alan Turing Institute, University of Oxford, University of Pennsylvania, McGill University, Borden Ladner Gervais LLP, The Decision Lab, HEC Montréal, Max Planck Institute, Libéo, University of Toronto. Corresponding author general: richard.janda@mcgill.ca Corresponding author for public health: abhinav.sharma@mcgill.ca Corresponding author for privacy: ywyu@math.toronto.edu Corresponding author for machine learning: yoshua.bengio@mila.quebec Corresponding author for user perspective: brooke@thedecisionlab.com Corresponding author for technical implementation: jean-francois.rousseau@libeo.com 1 ar X iv :2 00 5. 08 50 2v 2 [ cs .C R ] 2 7 Ju l 2 02 0