Guy Wolf

Membre Académique Principal
Guy Wolf
Professeur adjoint, Université de Montréal
Guy Wolf

Guy Wolf est professeur adjoint au département de mathématiques et de statistique de l’Université de Montréal. Ses sujets de recherche se situent à l’intersection de l’apprentissage automatique, de la science des données et des mathématiques appliquées. Il s’intéresse en particulier aux méthodes d’exploration des données qui utilisent l’apprentissage des variétés et l’apprentissage profond géométrique, ainsi qu’aux applications d’analyse exploratoire des données biomédicales, surtout ceux qui portent sur les données de cellules uniques (p.ex. scRNA-seq et CyTOF).

Les étudiants au doctorat et à la maîtrise qui sont intéressés à faire de la recherche à l’intersection des mathématiques appliquées, de l’apprentissage machine et des sciences des données sont invités à communiquer avec moi par courriel.

Publications

2020-12

Quantifying the effect of experimental perturbations at single-cell resolution
Daniel B Burkhardt, Jay S Stanley, Alexander Tong, Ana Luisa Perdigoto, Scott A Gigante, Kevan C Herold, Guy Wolf, Antonio J Giraldez, David van Dijk and Smita Krishnaswamy
bioRxiv
(2020-12-02)
www.biorxiv.orgPDF

2020-11

Multiscale PHATE Exploration of SARS-CoV-2 Data Reveals Multimodal Signatures of Disease
M. Kuchroo, J. Huang, P. Wong, J.-C. Grenier, D. Shung, A. Tong, C. Lucas, J. Klein, D. Burkhardt, S. Gigante, A. Godavarthi, B. Israelow, T. Mao, J. E. Oh, J. Silva, T. Takahashi, C. D. Odio, A. Casanovas-Massana, J. Fournier, Y. Impact Team... (8 more)
bioRxiv
(2020-11-17)
www.biorxiv.orgPDF

2020-10

Geometric Scattering Attention Networks
Yimeng Min, Frederik Wenkel and Guy Wolf
arXiv preprint arXiv:2010.15010
(2020-10-28)
arxiv.orgPDF
Data-Driven Learning of Geometric Scattering Networks
Alexander Tong, Frederik Wenkel, Kincaid MacDonald, Smita Krishnaswamy and Guy Wolf
arXiv preprint arXiv:2010.02415
(2020-10-06)
arxiv.orgPDF

2020-09

Fixing Bias in Reconstruction-Based Anomaly Detection with Lipschitz Discriminators
Alexander Tong, Guy Wolf and Smita Krishnaswamyt
MLSP 2020
(2020-09-01)
dblp.uni-trier.de
Learning General Transformations of Data for Out-of-Sample Extensions
Matthew Amodio, David van Dijk, Guy Wolf and Smita Krishnaswamy
MLSP 2020
(2020-09-01)
dblp.uni-trier.de

2020-07

Extendable and invertible manifold learning with geometry regularized autoencoders.
Andrés F. Duque, Sacha Morin, Guy Wolf and Kevin R. Moon
arXiv preprint arXiv:2007.07142
(2020-07-14)
dblp.uni-trier.dePDF
TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics
Alexander Tong, Jessie Huang, Guy Wolf, David van Dijk and Smita Krishnaswamy

2020-06

Advantages of biologically-inspired adaptive neural activation in RNNs during learning.
Victor Geadah, Giancarlo Kerg, Stefan Horoi, Guy Wolf and Guillaume Lajoie
arXiv preprint arXiv:2006.12253
(2020-06-22)
dblp.uni-trier.dePDF
Supervised Visualization for Data Exploration
Jake S. Rhodes, Adele Cutler, Guy Wolf and Kevin R. Moon
arXiv preprint arXiv:2006.08701
(2020-06-15)
ui.adsabs.harvard.eduPDF
Uncovering the Topology of Time-Varying fMRI Data using Cubical Persistence.
Bastian Rieck, Tristan Yates, Christian Bock, Karsten M. Borgwardt, Guy Wolf, Nicholas B. Turk-Browne and Smita Krishnaswamy
arXiv preprint arXiv:2006.07882
(2020-06-14)
dblp.uni-trier.dePDF
Uncovering the Folding Landscape of RNA Secondary Structure with Deep Graph Embeddings.
Egbert Castro, Andrew Benz, Alexander Tong, Guy Wolf and Smita Krishnaswamy
arXiv preprint arXiv:2006.06885
(2020-06-12)
dblp.uni-trier.dePDF

2020-05

Low-Dimensional Dynamics of Encoding and Learning in Recurrent Neural Networks
Stefan Horoi, Victor Geadah, Guy Wolf and Guillaume Lajoie
Canadian Conference on AI
(2020-05-13)
link.springer.com

2020-04

Interpretable Neuron Structuring with Graph Spectral Regularization
Alexander Tong, David van Dijk, Jay S. Stanley, Matthew Amodio, Kristina Yim, Rebecca Muhle, James Noonan, Guy Wolf and Smita Krishnaswamy
IDA 2020
(2020-04-27)
link.springer.comPDF

2020-03

Scattering GCN: Overcoming Oversmoothness in Graph Convolutional Networks.
Yimeng Min, Frederik Wenkel and Guy Wolf
arXiv preprint arXiv:2003.08414
(2020-03-18)
dblp.uni-trier.dePDF
Structural and developmental principles of neuropil assembly in C. elegans
Mark W. Moyle, Kristopher M. Barnes, Manik Kuchroo, Alex Gonopolskiy, Leighton H. Duncan, Titas Sengupta, Lin Shao, Min Guo, Anthony Santella, Ryan Christensen, Abhishek Kumar, Yicong Wu, Kevin R. Moon, Guy Wolf, Smita Krishnaswamy, Zhirong Bao, Hari Shroff, William Mohler and Daniel A. Colón-Ramos
bioRxiv
(2020-03-15)
www.biorxiv.orgPDF

2020-02

Identifying Critical Neurons in ANN Architectures using Mixed Integer Programming
Mostafa ElAraby, Guy Wolf and Margarida Carvalho
arXiv preprint arXiv:2002.07259
(2020-02-17)
ui.adsabs.harvard.eduPDF

2020-01

Uncovering axes of variation among single-cell cancer specimens.
William S. Chen, Nevena Zivanovic, David van Dijk, Guy Wolf, Bernd Bodenmiller and Smita Krishnaswamy
Nature Methods
(2020-01-13)
www.nature.com
Internal representation dynamics and geometry in recurrent neural networks.
Stefan Horoi, Guillaume Lajoie and Guy Wolf
arXiv preprint arXiv:2001.03255
(2020-01-09)
dblp.uni-trier.dePDF
Author Correction: Visualizing structure and transitions in high-dimensional biological data.
Kevin R. Moon, David van Dijk, Zheng Wang, Scott Gigante, Daniel B. Burkhardt, William S. Chen, Kristina Yim, Antonia van den Elzen, Matthew J. Hirn, Ronald R. Coifman, Natalia B. Ivanova, Guy Wolf and Smita Krishnaswamy
Nature Biotechnology
(2020-01-02)
www.nature.com
Scattering GCN: Overcoming Oversmoothness in Graph Convolutional Networks
Yimeng Min, Frederik Wenkel and Guy Wolf
NEURIPS 2020
(2020-01-01)
papers.nips.cc
Uncovering the Topology of Time-Varying fMRI Data using Cubical Persistence
Bastian Rieck, Tristan Yates, Christian Bock, Karsten M. Borgwardt, Guy Wolf, Nicholas B. Turk-Browne and Smita Krishnaswamy
NEURIPS 2020
(2020-01-01)
papers.nips.cc

2019-12

Visualizing structure and transitions in high-dimensional biological data.
Kevin R. Moon, David van Dijk, Zheng Wang, Scott Gigante, Daniel B. Burkhardt, William S. Chen, Kristina Yim, Antonia van den Elzen, Matthew J. Hirn, Ronald R. Coifman, Natalia B. Ivanova, Guy Wolf and Smita Krishnaswamy
Nature Biotechnology
(2019-12-03)
www.nature.com
Finding Archetypal Spaces Using Neural Networks
David van Dijk, Daniel B. Burkhardt, Matthew Amodio, Alexander Tong, Guy Wolf and Smita Krishnaswamy
BIG DATA 2019
(2019-12-01)
ieeexplore.ieee.org

2019-11

Understanding Graph Neural Networks with Asymmetric Geometric Scattering Transforms.
Michael Perlmutter, Feng Gao, Guy Wolf and Matthew J. Hirn
arXiv preprint arXiv:1911.06253
(2019-11-14)
dblp.uni-trier.dePDF

2019-10

Visualizing High Dimensional Dynamical Processes
Andres F. Duque, Guy Wolf and Kevin R. Moon
MLSP 2019
(2019-10-12)
sigport.orgPDF
Exploring single-cell data with deep multitasking neural networks.
Matthew Amodio, David van Dijk, Krishnan Srinivasan, William S. Chen, Hussein Mohsen, Kevin R. Moon, Allison Campbell, Yujiao Zhao, Xiaomei Wang, Manjunatha Venkataswamy, Anita Desai, V. Ravi, Priti Kumar, Ruth Montgomery, Guy Wolf and Smita Krishnaswamy
Nature Methods
(2019-10-07)
www.nature.comPDF

2019-09

Beyond GANs: Transforming without a Target Distribution
Matthew Amodio, David van Dijk, Ruth Montgomery, Guy Wolf and Smita Krishnaswamy
(venue unknown)
(2019-09-25)
openreview.netPDF
Geometric wavelet scattering on graphs and manifolds
Feng Gao, Matthew Hirn, Michael Perlmutter and Guy Wolf
Wavelets and Sparsity XVIII
(2019-09-09)
www.spiedigitallibrary.org
Quantifying the effect of experimental perturbations in single-cell RNA-sequencing data using graph signal processing
Daniel B. Burkhardt, Jay S. Stanley, Alexander Tong, Ana Luisa Perdigoto, Scott A. Gigante, Kevan C. Herold, Guy Wolf, Antonio J. Giraldez, David van Dijk and Smita Krishnaswamy
bioRxiv
(2019-09-06)
www.biorxiv.orgPDF

Publications collected and formatted using Paperoni

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