Yue Li

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Associate Academic Member
Yue Li
Assistant Professor, McGill University
Yue Li

Yue Li is an Associate Professor at the School of Computer Science at McGill University. His research focuses on the development of automatic learning approaches in the areas of polygenic risk of complex diseases, healthcare, and single-cell genomics. This includes the development of probabilistic and deep generative models to integrate multi-omic and electronic health records information from heterogeneous populations in order to dissect regulatory circuitry of human complex disease network.

Publications

2021-01

Learning interpretable cellular and gene signature embeddings from single-cell transcriptomic data
Yifan Zhao, Huiyu Cai, Zuobai Zhang, Jian Tang and Yue Li
bioRxiv
(2021-01-15)
www.biorxiv.orgPDF
Recurrent disease progression networks for modelling risk trajectory of heart failure.
Xing Han Lu, Aihua Liu, Shih-Chieh Fuh, Yi Lian, Liming Guo, Yi Yang, Ariane Marelli and Yue Li
PLOS ONE
(2021-01-06)
www.ncbi.nlm.nih.gov

2020-12

Supervised learning on phylogenetically distributed data.
Elliot Layne, Erika N Dort, Richard Hamelin, Yue Li and Mathieu Blanchette
Bioinformatics
(2020-12-30)
www.ncbi.nlm.nih.gov

2020-11

Deep feature extraction of single-cell transcriptomes by generative adversarial network.
Mojtaba Bahrami, Malosree Maitra, Corina Nagy, Gustavo Turecki, Hamid R Rabiee and Yue Li
Bioinformatics
(2020-11-23)
academic.oup.com
NERO: A Biomedical Named-entity (Recognition) Ontology with a Large, Annotated Corpus Reveals Meaningful Associations Through Text Embedding
K. Wang, R. Stevens, H. Alachram, Y. Li, L. Soldatova, R. King, S. Ananiadou, M. Li, F. Christopoulou, J. L. Ambite, S. Garg, U. Hermjakob, D. Marcu, E. Sheng, T. Beissbarth, E. Wingender, A. Galstyan, X. Gao, B. Chambers, B. B. Khomtchouk... (2 more)
bioRxiv
(2020-11-06)
www.biorxiv.orgPDF

2020-10

Assumptions about frequency-dependent architectures of complex traits bias measures of functional enrichment
Shadi Zabad, Aaron P. Ragsdale, Rosie Sun, Yue Li and Simon Gravel
bioRxiv
(2020-10-25)
www.biorxiv.orgPDF
Video Key Object Detection Network via Reinforcement Learning
Yue Li, Xiangchun Zhou, Tao Cui, Ruohan Gong, Zuqi Tang, Chuang Wang and Wei Wang
ISCAS 2020
(2020-10-01)
xplorestaging.ieee.org
Numeric Data Augmentation using Structural Constraint Wasserstein Generative Adversarial Networks
Wei Wang, Chuang Wang, Tao Cui, Ruohan Gong, Zuqi Tang, Xiangchun Zhou and Yue Li
ISCAS 2020
(2020-10-01)
xplorestaging.ieee.org

2020-09

Global Surveillance of COVID-19 by mining news media using a multi-source dynamic embedded topic model
Yue Li, Pratheeksha Nair, Zhi Wen, Imane Chafi, Anya Okhmatovskaia, Guido Powell, Yannan Shen and David Buckeridge
BIOINFORMATICS 2020
(2020-09-21)
dx.doi.org

2020-08

Partitioning gene-based variance of complex traits by gene score regression.
Wenmin Zhang, Si Yi Li, Tianyi Liu and Yue Li
PLOS ONE
(2020-08-20)
www.ncbi.nlm.nih.gov

2020-05

Inferring multimodal latent topics from electronic health records
Yue Li, Pratheeksha Nair, Xing Han Lu, Zhi Wen, Yuening Wang, Amir Ardalan Kalantari Dehaghi, Yan Miao, Weiqi Liu, Tamas Ordog, Joanna M. Biernacka, Euijung Ryu, Janet E. Olson, Mark A. Frye, Aihua Liu, Liming Guo, Ariane Marelli, Yuri Ahuja, Jose Davila-Velderrain and Manolis Kellis
Nature Communications
(2020-05-21)
www.nature.com
Study of Restrained Network Structures for Wasserstein Generative Adversarial Networks (WGANs) on Numeric Data Augmentation
Wei Wang, Chuang Wang, Tao Cui and Yue Li
IEEE Access
(2020-05-11)
doi.org

2020-04

Deep feature extraction of single-cell transcriptomes by generative adversarial network
Mojtaba Bahrami, Malosree Maitra, Corina Nagy, Gustavo Turecki, Hamid R. Rabiee and Yue Li
bioRxiv
(2020-04-29)
biorxiv.orgPDF

2020-02

Catalytic hydrolysis of microcystin-LR peptides on the surface of naturally occurring minerals
Yanfen Fang, Xinqiang Cao, Wei Zhou, Yue Li, David M. Johnson and Yingping Huang
Research on Chemical Intermediates
(2020-02-01)
link.springer.com

2020-01

A white-light-emitting single MOF sensor-based array for berberine homologue discrimination
Qian Wang, Qiao Liu, Xiao-Meng Du, Bo Zhao, Yue Li and Wen-Juan Ruan
Journal of Materials Chemistry C
(2020-01-30)
pubs.rsc.org
A luminescent MOF as a fluorescent sensor for the sequential detection of Al3+ and phenylpyruvic acid
Qian Wang, Xiao-Meng Du, Bo Zhao, Meili Pang, Yue Li and Wen-Juan Ruan
New Journal of Chemistry
(2020-01-27)
pubs.rsc.org
Ultrasensitive Assay of Alkaline Phosphatase Based on the Fluorescent Response Difference of the Metal-Organic Framework Sensor.
Xi-Yuan Yao, Qian Wang, Qiao Liu, Meili Pang, Xiao-Meng Du, Bo Zhao, Yue Li and Wen-Juan Ruan
ACS omega
(2020-01-14)
pubs.acs.orgPDF
Partitioning gene-based variance of complex traits by gene score regression
Yue Li, Si Yi Li, Wenmin Zhang and Tianyi Amanda Liu
bioRxiv
(2020-01-09)
www.biorxiv.orgPDF

2019-11

Study of Constrained Network Structures for WGANs on Numeric Data Generation.
Wei Wang, Chuang Wang, Tao Cui and Yue Li
arXiv preprint arXiv:1911.01649
(2019-11-05)
dblp.uni-trier.dePDF

2019-10

Metal-organic frameworks based fluorescent sensor array for discrimination of flavonoids.
Qiao Liu, Jie Gao, Zhe Zheng, Di Ning, Qian Wang, Xiao-Meng Du, Bo Zhao, Wen-Juan Ruan and Yue Li
Talanta
(2019-10-01)
www.sciencedirect.com

2019-09

Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci.
Jonathan M. Mudge, Irwin Jungreis, Toby Hunt, Jose Manuel Gonzalez, James C. Wright, Mike Kay, Claire Davidson, Stephen Fitzgerald, Ruth Seal, Susan Tweedie, Liang He, Robert M. Waterhouse, Yue Li, Elspeth Bruford, Jyoti S. Choudhary, Adam Frankish and Manolis Kellis
Genome Research
(2019-09-19)
www.ncbi.nlm.nih.govPDF

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