Publications

Studying the characteristics of AIOps projects on GitHub
Roozbeh Aghili
Heng Li
Foutse Khomh
2023-10-18
Empirical Software Engineering (publié)
doi.org
arxiv.org
Interpreting and Controlling Vision Foundation Models via Text Explanations
Haozhe Chen
Junfeng Yang
Carl Vondrick
Chengzhi Mao
2023-10-16
ArXiv (prépublication)
doi.org
arxiv.org
Transparent Anomaly Detection via Concept-based Explanations
Laya Rafiee Sevyeri
Ivaxi Sheth
Farhood Farahnak
Shirin A. Enger
2023-10-16
ArXiv (prépublication)
doi.org
arxiv.org
RelationalUNet for Image Segmentation
Ivaxi Sheth
Pedro H. M. Braga
Shiva Kanth Sujit
Sahar Dastani
Samira Ebrahimi Kahou
2023-10-15
Machine Learning in Medical Imaging (publié)
doi.org
Defining Feasibility as a Criterion for Essential Surgery: A Qualitative Study with Global Children’s Surgery Experts
Alizeh Abbas
Henry E. Rice
Dan Poenaru
Lubna Samad
2023-10-14
World Journal of Surgery (publié)
doi.org
A community effort in SARS-CoV-2 drug discovery.
Johannes Schimunek
Philipp Seidl
Katarina Elez
Tim Hempel
Tuan Le
Frank Noé
Simon Olsson
Lluís Raich
Robin Winter
Hatice Gokcan
Filipp Gusev
Evgeny M. Gutkin
Olexandr Isayev
Maria G. Kurnikova
Chamali H. Narangoda
Roman Zubatyuk
Ivan P. Bosko
Konstantin V. Furs
Anna D. Karpenko
Yury V. Kornoushenko … (voir 133 de plus)
Mikita Shuldau
Artsemi Yushkevich
Mohammed B. Benabderrahmane
Patrick Bousquet‐Melou
Ronan Bureau
Beatrice Charton
Bertrand C. Cirou
Gérard Gil
William J. Allen
Suman Sirimulla
Stanley Watowich
Nick Antonopoulos
Nikolaos Epitropakis
Agamemnon Krasoulis
Vassilis Pitsikalis
Stavros Theodorakis
Igor Kozlovskii
Anton Maliutin
Alexander Medvedev
Petr Popov
Mark Zaretckii
Hamid Eghbal‐Zadeh
Christina Halmich
Sepp Hochreiter
Andreas Mayr
Peter Ruch
Michael Widrich
Francois Berenger
Ashutosh Kumar
Yoshihiro Yamanishi
Kam Y. J. Zhang
Emmanuel Bengio
Yoshua Bengio
Moksh J. Jain
Maksym Korablyov
Cheng-Hao Liu
Gilles Marcou
Marcous Gilles
Enrico Glaab
Kelly Barnsley
Suhasini M. Iyengar
Mary Jo Ondrechen
V. Joachim Haupt
Florian Kaiser
Michael Schroeder
Luisa Pugliese
Simone Albani
Christina Athanasiou
Andrea Beccari
Paolo Carloni
Giulia D'Arrigo
Eleonora Gianquinto
Jonas Goßen
Anton Hanke
Benjamin P. Joseph
Daria B. Kokh
Sandra Kovachka
Candida Manelfi
Goutam Mukherjee
Abraham Muñiz‐Chicharro
Francesco Musiani
Ariane Nunes‐Alves
Giulia Paiardi
Giulia Rossetti
S. Kashif Sadiq
Francesca Spyrakis
Carmine Talarico
Alexandros Tsengenes
Rebecca C. Wade
Conner Copeland
Jeremiah Gaiser
Daniel R. Olson
Amitava Roy
Vishwesh Venkatraman
Travis J. Wheeler
Haribabu Arthanari
Klara Blaschitz
Marco Cespugli
Vedat Durmaz
Konstantin Fackeldey
Patrick D. Fischer
Christoph Gorgulla
Christian Gruber
Karl Gruber
Michael Hetmann
Jamie E. Kinney
Krishna M. Padmanabha Das
Shreya Pandita
Amit Singh
Georg Steinkellner
Guilhem Tesseyre
Gerhard Wagner
Zi‐Fu Wang
Ryan J. Yust
Dmitry S. Druzhilovskiy
Dmitry A. Filimonov
Pavel V. Pogodin
Vladimir Poroikov
Anastassia V. Rudik
Leonid A. Stolbov
Alexander V. Veselovsky
Maria De Rosa
Giada De Simone
Maria R. Gulotta
Jessica Lombino
Nedra Mekni
Ugo Perricone
Arturo Casini
Amanda Embree
D. Benjamin Gordon
David Lei
Katelin Pratt
Christopher A. Voigt
Kuang‐Yu Chen
Yves Jacob
Tim Krischuns
Pierre Lafaye
Agnès Zettor
M. Luis Rodríguez
Kris M. White
Daren Fearon
Frank Von Delft
Martin A. Walsh
Dragos Horvath
Charles L. Brooks
Babak Falsafi
Bryan Ford
Adolfo García‐Sastre
Sang Yup Lee
Nadia Naffakh
Alexandre Varnek
Günter Klambauer
Thomas M. Hermans
The COVID-19 pandemic continues to pose a substantial threat to human lives and is likely to do so for years to come. Despite the availabili… (voir plus)ty of vaccines, searching for efficient small-molecule drugs that are widely available, including in low- and middle-income countries, is an ongoing challenge. In this work, we report the results of an open science community effort, the "Billion molecules against Covid-19 challenge", to identify small-molecule inhibitors against SARS-CoV-2 or relevant human receptors. Participating teams used a wide variety of computational methods to screen a minimum of 1 billion virtual molecules against 6 protein targets. Overall, 31 teams participated, and they suggested a total of 639,024 molecules, which were subsequently ranked to find 'consensus compounds'. The organizing team coordinated with various contract research organizations (CROs) and collaborating institutions to synthesize and test 878 compounds for biological activity against proteases (Nsp5, Nsp3, TMPRSS2), nucleocapsid N, RdRP (only the Nsp12 domain), and (alpha) spike protein S. Overall, 27 compounds with weak inhibition/binding were experimentally identified by binding-, cleavage-, and/or viral suppression assays and are presented here. Open science approaches such as the one presented here contribute to the knowledge base of future drug discovery efforts in finding better SARS-CoV-2 treatments.
2023-10-13
Molecular Informatics (publié)
doi.org
Jointly-Learned Exit and Inference for a Dynamic Neural Network : JEI-DNN
Florence Regol
Joud Chataoui
Mark Coates
2023-10-13
ArXiv (prépublication)
doi.org
arxiv.org
Posterior Sampling of the Initial Conditions of the Universe from Non-linear Large Scale Structures using Score-Based Generative Models
Ronan Legin
Matthew Ho
Pablo Lemos
Laurence Perreault-Levasseur
Shirley Ho
Yashar Hezaveh
Benjamin Wandelt
2023-10-13
Monthly Notices of the Royal Astronomical Society: Letters (publié)
doi.org
arxiv.org
Predicting Solar PV Output Based on Hybrid Deep Learning and Physical
Models: Case Study of Morocco
Samira Abousaid
Loubna Benabbou
Hanane Dagdougui
Ismail Belhaj
Abdelaziz Berrado
Hicham Bouzekri
2023-10-13
Recent Advances in Electrical & Electronic Engineering (Formerly Recent Patents on Electrical & Electronic Engineering) (publié)
doi.org
Summary of the Fourth International Workshop on Deep Learning for Testing and Testing for Deep Learning (DeepTest 2023)
Matteo Biagiola
Nicolás Cardozo
Donghwan Shin
Foutse Khomh
Andrea Stocco
Vincenzo Riccio
2023-10-13
ACM SIGSOFT Softw. Eng. Notes (publié)
doi.org
A cry for help: Early detection of brain injury in newborns
Charles Onu
Samantha Latremouille
Arsenii Gorin
Junhao Wang
Uchenna Ekwochi
P. Ubuane
O. Kehinde
Muhammad A. Salisu
Datonye Briggs
Yoshua Bengio
Doina Precup
2023-10-12
ArXiv (prépublication)
doi.org
arxiv.org
Lag-Llama: Towards Foundation Models for Probabilistic Time Series Forecasting
Kashif Rasul
Arjun Ashok
Andrew Robert Williams
Arian Khorasani
George Adamopoulos
Rishika Bhagwatkar
Marin Bilovs
Hena Ghonia
N. Hassen
Anderson Schneider
Sahil Garg
Alexandre Drouin
Nicolas Chapados
Yuriy Nevmyvaka
Irina Rish
Over the past years, foundation models have caused a paradigm shift in machine learning due to their unprecedented capabilities for zero-sho… (voir plus)t and few-shot generalization. However, despite the success of foundation models in modalities such as natural language processing and computer vision, the development of foundation models for time series forecasting has lagged behind. We present Lag-Llama, a general-purpose foundation model for univariate probabilistic time series forecasting based on a decoder-only transformer architecture that uses lags as covariates. Lag-Llama is pretrained on a large corpus of diverse time series data from several domains, and demonstrates strong zero-shot generalization capabilities compared to a wide range of forecasting models on downstream datasets across domains. Moreover, when fine-tuned on relatively small fractions of such previously unseen datasets, Lag-Llama achieves state-of-the-art performance, outperforming prior deep learning approaches, emerging as the best general-purpose model on average. Lag-Llama serves as a strong contender to the current state-of-art in time series forecasting and paves the way for future advancements in foundation models tailored to time series data.
2023-10-12
ArXiv (prépublication)
arxiv.org
arxiv.org